PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006377.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 178aa MW: 18836.3 Da PI: 8.7219

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006377.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.5e-10	75	97	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 Cr+f rtG C+yGd+Ck+ H++ Aco006377.1 75 VCRHFVRTGVCRYGDSCKYYHPK 97 5********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	3.9E-5	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	1.46E-13	4	43	No hit	No description
Pfam	PF06220	7.2E-11	5	36	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	15.422	70	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-5	72	97	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.54E-8	74	100	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-7	75	99	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-8	75	97	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MPLGKYYCDY CEKQFQDTPS ARKRHLQGAT HLRARALWFD SLKVAETTHG SASLPLLRRP 60 PDGTFAAAAA AAQGVCRHFV RTGVCRYGDS CKYYHPKPEF VNQAAAAAAA AATAASAGLG 120 VAEGVQAPNF FGNPLTGGSS FSGEMARDKM ALWGHLPPSL QPPPDGGYPP LPFVDWG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727992	2e-33	KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020102545.1	1e-128	zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q0JP11	8e-55	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A199V1H8	2e-84	A0A199V1H8_ANACO; Zinc finger CCCH domain-containing protein 3
STRING	Pavir.Eb00973.1.p	1e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-25	C3H family protein

Link Out ? help Back to Top
Phytozome	Aco006377.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]