PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006383.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GeBP
Protein Properties Length: 459aa    MW: 49064.2 Da    PI: 4.4842
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006383.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.92.3e-36159258297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                  lfqrlw++eDei++L+G++df++++g+   +++ d+  fye +kk+++f+++k+ql+eK+rrLKkK++++v++ +  gk+++f+++h+q ife+++ i
  Aco006383.1 159 LFQRLWTDEDEIIILRGFLDFTSRRGTtfASHQyDTGPFYEEMKKQLQFEFTKNQLIEKLRRLKKKYRNCVNRiSTMGKDFAFKSAHEQAIFEIARNI 256
                  79************************99877778***************************************6778********************* PP

       DUF573  96 Wg 97 
                  W+
  Aco006383.1 257 WR 258
                  *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.9E-32160257IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MPSAEEERAV FEDDDDEETE GDDTEEEDDD ADADADAEPL AVAPPATAAA PTAERLSGSA  60
IPSSSDRPPN PNPNPNPTSS AAANPNSSSS DPSSSDLTPS SAHPQNGAIP AAASAPVAVS  120
VSGGATPTAA ADPGRALVVS SASEERRPPG SAFDESRRLF QRLWTDEDEI IILRGFLDFT  180
SRRGTTFASH QYDTGPFYEE MKKQLQFEFT KNQLIEKLRR LKKKYRNCVN RISTMGKDFA  240
FKSAHEQAIF EIARNIWRPG IKRSRDSDDD ENEDLNPPTN DADPNHAIVV ADGPLSSDRR  300
VLRTRRRLRR RTTEESAAVA ADTGAGTAVP VMVTVENSIP PPQTPSVQPA TVPGIIEETV  360
KSCLSPLFKE LINSAIGGGP QLSSGLLGGG GLLGLLGVSP PSLNIGGNLG SNSSGTPPVD  420
EKWRKQQVLE LEVYLKRIEL VQEQIKLTLE ELKKPGVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103423.10.0probable transcription factor At5g28040
TrEMBLA0A199V1U10.0A0A199V1U1_ANACO; Mediator-associated protein 1
STRINGXP_008778158.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-54DNA-binding storekeeper protein-related transcriptional regulator