PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006567.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 221aa    MW: 22901 Da    PI: 12.1264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006567.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-202978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp    k+ r++lg+f+tae+Aa+a++aa+++++g
  Aco006567.1 29 RYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTFDTAEDAARAYDAAALQFRG 78
                 69*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.5132986IPR001471AP2/ERF domain
PfamPF008478.9E-142978IPR001471AP2/ERF domain
CDDcd000182.26E-172985No hitNo description
SMARTSM003801.8E-352992IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-222986IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-322987IPR001471AP2/ERF domain
PRINTSPR003672.9E-113041IPR001471AP2/ERF domain
PRINTSPR003672.9E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVEEMKASTK KPRVARSGGG GAAAEGGVRY RGVRKRPWGR FAAEIRDPAK KSRVWLGTFD  60
TAEDAARAYD AAALQFRGPK AKTNFAAAAA AAAAASAAAP SSPPAAAPPR RAPLRPPSLD  120
LELALPSRAS PPRGAQRVPL LRPDRPIRQE RRRRRRRGGK RVRRRANGGG AEGAKGFGGG  180
GGGGAVSDSD SSSVIDSPAR GFAFEIDLNL PPPPEVAAAK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-222785362ATERF1
3gcc_A7e-222785362ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147156RQERRRRRRR
2150156RRRRRRR
3150164RRRRRRRGGKRVRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6654771e-121KM665477.1 Ananas bracteatus clone 50627b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102436.11e-146ethylene-responsive transcription factor 8-like
TrEMBLA0A199UPM12e-47A0A199UPM1_ANACO; Ethylene-responsive transcription factor 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-15erf domain protein 9