PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006854.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 645aa    MW: 70846.2 Da    PI: 4.2464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006854.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.3e-53191471129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+++ g++l++ ++i+e+d+yk+ePwdLp+  +++++++ewyfFs+ d+kya+++r+nrat+ gyWk+tgkd+ev + +
  Aco006854.1  19 LAPGFRFHPTDEELVIYYLKRRILGRSLRV-DAIAEIDLYKCEPWDLPArsRIRSRDTEWYFFSTLDRKYANKSRTNRATAMGYWKTTGKDREVRH-G 114
                  579***************************.99**************94358888999**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++vg+kktLvf+ grap+g +t+Wvmheyrle
  Aco006854.1 115 SRVVGMKKTLVFHAGRAPRGDRTNWVMHEYRLE 147
                  *******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6211169IPR003441NAC domain
PROSITE profilePS5100558.61219169IPR003441NAC domain
PfamPF023653.2E-2721146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MSGGGAVPSS DASPPSVPLA PGFRFHPTDE ELVIYYLKRR ILGRSLRVDA IAEIDLYKCE  60
PWDLPARSRI RSRDTEWYFF STLDRKYANK SRTNRATAMG YWKTTGKDRE VRHGSRVVGM  120
KKTLVFHAGR APRGDRTNWV MHEYRLEGEE IANAAVSQDS FVVCRVFQKS GSGPQNGAQY  180
GAPFVEGEWA EETDTVALEV NDGEKEEYLQ MNDFSQIQDQ VNQHDTLPGS APSSIESDDS  240
SHVDDPVGLT EVVKTEPNII DDMIEYYELE QKNSLELNNN AEERAIVTES SSSPCQNGQY  300
VELNDLKDVV NLDFPHSDDS TTWPLKTCYK QNFMNGIDSG SNLQEILDVE EFFDTMNEDS  360
DSQEPTVLCD NSYLATNFYS SEQGNENMVF YDASSDDPAN GKDEFVHPNG PLPTPISSSS  420
GFDMVDELLT YFDTTENMLG SVDNLEATDA YLPNLSNFTQ QVDATCNATS MVLEANDQCG  480
ASSSAGPSDA INKLNEKTKD LTPVSDISMD DIGDKSIRKH LVHMLGSISA PPALAEEFCA  540
GPGKSIVPIS AAHSASSSVH VTAGIIQIGG LTFSGNTPKN GDYGFLISYS IDGNLPTKSV  600
EYDPITKMNG SAIATIFHSG FYLFFLSTLI LAVSYKLGVC FYNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-501916915168Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113025.10.0NAC domain-containing protein 53-like
TrEMBLA0A199VWN70.0A0A199VWN7_ANACO; NAC domain-containing protein 78
STRINGXP_008779162.10.0(Phoenix dactylifera)
STRINGXP_008787444.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.17e-87NAC domain containing protein 2