PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006877.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 199aa    MW: 21667.4 Da    PI: 6.4944
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006877.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.4e-397106199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll +lp  +r +a+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l+ael++l
  Aco006877.1   7 PCGACKFLRRKCVRGCVFAPYFAHEQgAAHFAAIHKVFGASNVSKLLMHLPVGDRCEAAVTIAYEAQARLRDPIYGCVAHIFALQQQVVNLQAELSSL 104
                  7*************************89*******************************************************************987 PP

       DUF260  98 ke 99 
                   +
  Aco006877.1 105 VA 106
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2346108IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-387103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAGFGSPCGA CKFLRRKCVR GCVFAPYFAH EQGAAHFAAI HKVFGASNVS KLLMHLPVGD  60
RCEAAVTIAY EAQARLRDPI YGCVAHIFAL QQQVVNLQAE LSSLVAQAAQ SRGHEQGFLF  120
PPDGDLRMPQ PSVSNDRENI FIDNNGLLDS TTFYDSRACN GTQWFANGDH VSLDMDDKSY  180
CTMGEDLRSV AFGYINGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3631037106LOB family transfactor Ramosa2.1
5ly0_B5e-3631037106LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113333.11e-148LOB domain-containing protein 29-like
SwissprotQ5UG139e-65LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLA0A199VFA51e-142A0A199VFA5_ANACO; LOB domain-containing protein 29
STRINGXP_008794315.11e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-64lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]