PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007021.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WOX

Protein Properties

Length: 219aa MW: 24345.3 Da PI: 7.6665

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007021.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.1e-21	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Aco007021.1 6 STRWCPTPEQLMILEEMYRSgVRTPNAAQIQQITAHLsfygKIEGKNVFYWFQNHKARDRQ 66 58***************99***********************************996 PP
2	Wus_type_Homeobox	122.4	1.7e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Aco007021.1 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAQIQQITAHLSFYGKIEGKNVFYWFQNHKARDRQK 67 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.252	2	67	IPR001356	Homeobox domain
SMART	SM00389	8.3E-6	4	71	IPR001356	Homeobox domain
CDD	cd00086	2.62E-5	5	67	No hit	No description
Pfam	PF00046	1.3E-18	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-11	7	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-8	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAQIQQITA HLSFYGKIEG KNVFYWFQNH 60 KARDRQKLRR RLSRHQQMLH HQLGHHPDQE ASPPPPSTPP PAAATASGSH PNIQLHPHNS 120 SPFFHQVAWM GYFQEAVDMQ GMDLVGKLGA GESSEEESTN AYDHQEWMTM MGLSCTASTS 180 LPPSCKPPKT LDLFPLKSSG LKDECTSSKS SSCSTSTN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114319.1	1e-132	WUSCHEL-related homeobox 3-like
Swissprot	Q70UV1	2e-46	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	A0A2H3WZS3	2e-72	A0A2H3WZS3_PHODC; WUSCHEL-related homeobox 3B-like
STRING	XP_008776170.1	4e-73	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	8e-36	WOX family protein

Link Out ? help Back to Top
Phytozome	Aco007021.1

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]