PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007032.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YB
Protein Properties Length: 270aa    MW: 28963.8 Da    PI: 8.7922
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007032.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.36.9e-56107200194
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  vreqdrflPian+srimkk+lPan+ki+kdaket+qecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplk+yl+kyre +
  Aco007032.1 107 VREQDRFLPIANISRIMKKALPANGKIAKDAKETLQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREGD 200
                  69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-54104216IPR009072Histone-fold
SuperFamilySSF471138.85E-40110226IPR009072Histone-fold
PfamPF008085.9E-28113177IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-22141159No hitNo description
PROSITE patternPS006850144160IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-22160178No hitNo description
PRINTSPR006153.8E-22179197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNGVDSQTLL PISHPHRLLL PLFSSVRSLS SALHRPPSPL SPPLLGARLN TNPPILPPLS  60
RTHRVCVYNG DGSRASNMAE APGSPGGGGG GGGSHESGGD GSPRSGVREQ DRFLPIANIS  120
RIMKKALPAN GKIAKDAKET LQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL  180
GFEDYIEPLK LYLQKYREGD NKMSGKGGDG TKKDVAGPHG GAQDEPTGVL HSGNELYETS  240
GRESRYPLQR KKANALEFWD LIIVVISQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-48106198294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-48106198294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954395e-72AB095439.1 Oryza sativa Japonica Group OsHAP3B mRNA for HAP3, partial cds.
GenBankAK1008115e-72AK100811.1 Oryza sativa Japonica Group cDNA clone:J023121O11, full insert sequence.
GenBankKJ8622145e-72KJ862214.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit B2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114380.11e-121nuclear transcription factor Y subunit B-1-like isoform X1
TrEMBLA0A199W6D61e-101A0A199W6D6_ANACO; Nuclear transcription factor Y subunit B
STRINGGSMUA_Achr8P17450_0014e-75(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-67nuclear factor Y, subunit B1