PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007122.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 288aa    MW: 32212.7 Da    PI: 5.8212
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007122.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.93.1e-26109170159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDg++WrKYGqKe+ + ++prsY+rCt++   +Cp++++v+  ++dp+++eitY geH+++
  Aco007122.1 109 MDDGFTWRKYGQKEILNLKHPRSYFRCTHKydkRCPATRQVQIWEQDPSMLEITYIGEHTCR 170
                  59***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-26102170IPR003657WRKY domain
PROSITE profilePS5081118.119104167IPR003657WRKY domain
SuperFamilySSF1182902.48E-24105170IPR003657WRKY domain
SMARTSM007741.2E-35109171IPR003657WRKY domain
PfamPF031068.4E-25110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTNETQRAL ENHNSTAVGE LIRGWRSAVK LEELLREFLP PENLGTDSAI LALVADILGS  60
FSKTVNALDS ERQGQGSHFN RSARSTRRNW RGRRRVHPYE CTRVLTKTMD DGFTWRKYGQ  120
KEILNLKHPR SYFRCTHKYD KRCPATRQVQ IWEQDPSMLE ITYIGEHTCR DLHNSSTITD  180
IVDSNATTTT TNHNDHNDQN APPFSSSSSS SSSAYSSKEA SPLTFPVLPD IVGFDPVMPI  240
AQLASFASEV LPSVQSSTGC SDANFDEKFL EVDDILGFDD QFGLFLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-27104170369OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113656.10.0probable WRKY transcription factor 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-26WRKY DNA-binding protein 70