PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007210.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 735aa    MW: 83314.4 Da    PI: 8.8145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-08678721344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      +W++  +  l++a k ++++   +W+++a+ ++ g+t  qck ++
      Aco007210.1 678 AWSETQERALIQALKAFPKDvsqRWERVAAAVP-GKTVIQCKKKF 721
                      8********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.3E-21139254IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.1E-21171275IPR001623DnaJ domain
SMARTSM002712.1E-15175250IPR001623DnaJ domain
PROSITE profilePS5007618.395176258IPR001623DnaJ domain
PfamPF002265.6E-18176255IPR001623DnaJ domain
CDDcd062574.72E-14176247IPR001623DnaJ domain
PRINTSPR006251.2E-6199214IPR001623DnaJ domain
PRINTSPR006251.2E-6230250IPR001623DnaJ domain
PROSITE patternPS006360235254IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.133543598IPR017877Myb-like domain
SuperFamilySSF466891.2E-6543591IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-4543590IPR009057Homeodomain-like
SMARTSM007177.4E-5547600IPR001005SANT/Myb domain
CDDcd001672.68E-4550590No hitNo description
Gene3DG3DSA:1.10.10.601.1E-5674721IPR009057Homeodomain-like
PROSITE profilePS5129310.814674729IPR017884SANT domain
SMARTSM007179.5E-8675727IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-9677731IPR009057Homeodomain-like
PfamPF002491.1E-6678721IPR001005SANT/Myb domain
CDDcd001672.20E-6678725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
PTRPLFFSYF TQYRTPSQRS LPPNPNLTLT LILSSSPSRS RSRATPNPHL SGSDSTSNRI  60
SQSSCRSDTI TPSSFGMDTC ARRLLIAYSS EILNGEPVLV SSNCLPVKAF NFEPAGHAFH  120
SAALKILGLG EEEEEDTETD DQSVSSDDRS QAYTAYSDSY TSKGKKKSTS GSKEQDHYAL  180
LGLGHLRFLA TDEQIRKSYR EMALKHHPDK QGALILAEET EEAKQAKKDE IESHFKAIQE  240
AYEVLIDPVK RRIYDSTDEF DDDIPTDCAP QDFFKVFGLA FMRNGRWSAN QPIPNLGDDN  300
TPLEEVDKFY NFWYTFKSWR EFPHADEYDL EQAESRDHKR WMERQNVKLQ EKARKSEYAR  360
IRTLVDNAYK KDPRILRRKE EEKAEKKKKK EAKYLARKLQ EEEAARAAEE ERRRKEEEEK  420
RAAEASLNQK KLKEKEKKLL RKERTRLRSL TASIVSKNEL GLSDNDVETL CMSLEMEQLK  480
QLCDEIEKKE GDGRARLLKS AINKDNLDTK KQVNDSQPSG PKASDLKANG VAGEVKQSAP  540
LSNYEKKERP WGKEEIEMLR KGMQKYQKGT SRRWEVISEY IGTSRSVEEI LKATKTVLLQ  600
KPDSAKAFDS FLEKRKPAQA IASPLSTRVE TEGLPAPGSQ PASSEAASQS ETNSASQKAE  660
ARDILSSNGA ASGAEQDAWS ETQERALIQA LKAFPKDVSQ RWERVAAAVP GKTVIQCKKK  720
FALMKENFRS KKSTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1927237520123Zuotin
5dje_B8e-1927237520123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411432RRRKEEEEKRAAEASLNQKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6656660.0KM665666.1 Ananas bracteatus clone 50845 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114049.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_020114050.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2H4A0H40.0A0A2H4A0H4_PHODC; dnaJ homolog subfamily C member 2-like
STRINGXP_008811954.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain