PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007254.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 515aa    MW: 55336.6 Da    PI: 6.8816
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007254.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.36.4e-114595081374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgd.....................pmqRlaayfteALaarlar.svselykalppsetseknss 75 
                  l++lL +cA  v++g+le+a+a+Lar+  l + ++ +                      ++Rla+ ft ALa+rl+r   ++ y+al + ++s ++  
  Aco007254.1  59 LINLLRQCAFDVDAGSLERADACLARIAGLlS-SSSSssassasptgggggggggqatRVHRLATIFTDALARRLLRrPLPGAYEALLAPAAS-SDPL 154
                  5789***********************99853.3332257899999**********9999****************999*******9776665.4566 PP

         GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                    +a ++ f++++P+lk+++lt NqaIle +ege+ vHi+D+   +  ++QW+aLl+aL +Rpegpp+lRiT+v++    + ++l++t   L+k A++
  Aco007254.1 155 LLAATRRHFFDLCPFLKLAFLTSNQAILEQMEGERVVHIVDLAgpAADPAQWLALLRALRARPEGPPHLRITAVHD----DPDALHRTSALLSKEADA 248
                  66677788**********************************755899****************************....****************** PP

         GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................................... 214
                   +++f+f++ v +rl++l++++Lrvk+gEalaV++vlqlh+ll                                                       
  Aco007254.1 249 HDMSFQFHP-VLSRLDALDFDSLRVKTGEALAVSSVLQLHSLLppaaaaadsnstaalalrhahhlspgsfgellerelslghghgrghpfspspdah 345
                  *********.7**************************************************************************************9 PP

         GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                       + +++ +++++L+ +  l Pk+vvv+eqea+hn++ F erf+eal+yy+a+fd+le+++pr + e   vEr llg++i+n+vacegaerrerh
  Aco007254.1 346 slaPTPPHSPRRIESFLSGLLALAPKIVVVTEQEANHNGAAFCERFSEALYYYAAMFDCLETTAPRSAAEWGRVERLLLGEQIRNIVACEGAERRERH 443
                  998444444556777*********************************************************************************** PP

         GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+l++W +rl++aGF+ vpls +a  +a+ ll++++ dgy+v++ +g+++++W++rpL+svSaWr
  Aco007254.1 444 ERLQRWAQRLRDAGFGHVPLSFDALLEARKLLQTFGRDGYKVDDWNGCFFFCWHERPLYSVSAWR 508
                  ****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.57733488IPR005202Transcription factor GRAS
PfamPF035142.2E-11159508IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGQDEFSPST VTSSPLLLQS PWALAPFAAA AAASSPTPFL GYGGSPWAAA ASGDRGVELI  60
NLLRQCAFDV DAGSLERADA CLARIAGLLS SSSSSSASSA SPTGGGGGGG GGQATRVHRL  120
ATIFTDALAR RLLRRPLPGA YEALLAPAAS SDPLLLAATR RHFFDLCPFL KLAFLTSNQA  180
ILEQMEGERV VHIVDLAGPA ADPAQWLALL RALRARPEGP PHLRITAVHD DPDALHRTSA  240
LLSKEADAHD MSFQFHPVLS RLDALDFDSL RVKTGEALAV SSVLQLHSLL PPAAAAADSN  300
STAALALRHA HHLSPGSFGE LLERELSLGH GHGRGHPFSP SPDAHSLAPT PPHSPRRIES  360
FLSGLLALAP KIVVVTEQEA NHNGAAFCER FSEALYYYAA MFDCLETTAP RSAAEWGRVE  420
RLLLGEQIRN IVACEGAERR ERHERLQRWA QRLRDAGFGH VPLSFDALLE ARKLLQTFGR  480
DGYKVDDWNG CFFFCWHERP LYSVSAWRCN RLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-426550725378Protein SCARECROW
5b3h_A8e-436550724377Protein SCARECROW
5b3h_D8e-436550724377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113650.10.0scarecrow-like protein 3
TrEMBLA0A199W6G50.0A0A199W6G5_ANACO; Scarecrow-like protein 3
STRINGXP_008776639.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-110scarecrow-like 3