PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007331.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SBP

Protein Properties

Length: 996aa MW: 109537 Da PI: 6.4395

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007331.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +dls+ k+yhrrhkvCe+h+ka++++v + qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Aco007331.1 147 VCQVEGCGTDLSTSKDYHRRHKVCEMHAKATTAVVGNAVQRFCQQCSRFHHLQEFDEGKRSCRRRLAGHNRRRRKTHP 224 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	142	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.146	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.46E-38	146	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.6E-30	148	221	IPR004333	Transcription factor, SBP-box
CDD	cd00204	4.02E-9	748	879	No hit	No description
SuperFamily	SSF48403	1.27E-8	752	880	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.0E-7	774	878	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MEAQLGGGSN HFYGNGVLER NGIGKRNFEW DLNDWKWDGD LFLASPLNGG LTDRTNKQLI 60 TNAANGLPSN SSSSGSEETD LVIVRPGYAE SEKRKRTVDL EEAEPSDGNG SLSLKLGGHE 120 YPTVEANGED KNGKKSKSAG CSTNRPVCQV EGCGTDLSTS KDYHRRHKVC EMHAKATTAV 180 VGNAVQRFCQ QCSRFHHLQE FDEGKRSCRR RLAGHNRRRR KTHPDAAVGG TTSDEKSSSS 240 LLMSLLKILT NLHSDSAEPA NNQDLVSHFL RNLANLAGLL DATKLAGLLQ SSQSLQKLGN 300 SAGTSSDVAN ALILNSASAP EASRKLVCSA SAVACVSAAQ DPCKLSGASV PCAIPTECTP 360 ARADTIRTEP TVHKARLKDF DLNSTYGDTQ ECGEAYEQSV NPAYIVNGSP TGPSWLLQDS 420 RQLSPPQTSG TSYSTSEKSQ SSSNGDGQCR TDRIVFKLFG KDPNDLPLVL RAQILDWLSN 480 SPTDIESYIR PGCIILTVYL RLTNSALEEL CNSLSSYLER LLNSSANDFW RSGWIYARIE 540 DQIAFIHNGQ ILLEAPLPLA YHDHCEIACV SPIAVPHSSK VTFTVKGFNL ARSATRILCS 600 FEGKCLVEET TKQSVLEETD EDTQQEGPEC LSFSCSLPES RGRGFIEVED ETLSNAFFPF 660 IVADQELCSE ICILESSIDV VDDCSEERSD TEIARKQALY FINELGWLLR KTNLRTKYQK 720 MEVYPALFHL RRFQWLISFA MEHDWCAVIK QLLDILFSGT VDLDGKSPRE IALSENLLHT 780 AVRRNCKAMV KVLLKYTPPV KNSEDKFEKL LFRPDVVGPS NLTPLHIAAA TSGVEDVLDA 840 LTDDPDMRGI TAWKSARDNN GFTPEDYARV QGHESYLHLV RKKTDRELDK GHVVIGIPGN 900 LCAKFANDPR PVNSSFEISK NKLASSAPAP YCNRCSMQMA HRSLGTRTLL YRPLILSMVG 960 IAAVCVCVGL LFKSPPTVLY VFPSFRWELL TYGSM*

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MEAQLGGGSN HFYGNGVLER NGIGKRNFEW DLNDWKWDGD LFLASPLNGG LTDRTNKQLI  60
TNAANGLPSN SSSSGSEETD LVIVRPGYAE SEKRKRTVDL EEAEPSDGNG SLSLKLGGHE  120
YPTVEANGED KNGKKSKSAG CSTNRPVCQV EGCGTDLSTS KDYHRRHKVC EMHAKATTAV  180
VGNAVQRFCQ QCSRFHHLQE FDEGKRSCRR RLAGHNRRRR KTHPDAAVGG TTSDEKSSSS  240
LLMSLLKILT NLHSDSAEPA NNQDLVSHFL RNLANLAGLL DATKLAGLLQ SSQSLQKLGN  300
SAGTSSDVAN ALILNSASAP EASRKLVCSA SAVACVSAAQ DPCKLSGASV PCAIPTECTP  360
ARADTIRTEP TVHKARLKDF DLNSTYGDTQ ECGEAYEQSV NPAYIVNGSP TGPSWLLQDS  420
RQLSPPQTSG TSYSTSEKSQ SSSNGDGQCR TDRIVFKLFG KDPNDLPLVL RAQILDWLSN  480
SPTDIESYIR PGCIILTVYL RLTNSALEEL CNSLSSYLER LLNSSANDFW RSGWIYARIE  540
DQIAFIHNGQ ILLEAPLPLA YHDHCEIACV SPIAVPHSSK VTFTVKGFNL ARSATRILCS  600
FEGKCLVEET TKQSVLEETD EDTQQEGPEC LSFSCSLPES RGRGFIEVED ETLSNAFFPF  660
IVADQELCSE ICILESSIDV VDDCSEERSD TEIARKQALY FINELGWLLR KTNLRTKYQK  720
MEVYPALFHL RRFQWLISFA MEHDWCAVIK QLLDILFSGT VDLDGKSPRE IALSENLLHT  780
AVRRNCKAMV KVLLKYTPPV KNSEDKFEKL LFRPDVVGPS NLTPLHIAAA TSGVEDVLDA  840
LTDDPDMRGI TAWKSARDNN GFTPEDYARV QGHESYLHLV RKKTDRELDK GHVVIGIPGN  900
LCAKFANDPR PVNSSFEISK NKLASSAPAP YCNRCSMQMA HRSLGTRTLL YRPLILSMVG  960
IAAVCVCVGL LFKSPPTVLY VFPSFRWELL TYGSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-29	142	221	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020113769.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_020113770.1	0.0	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A199V0C1	0.0	A0A199V0C1_ANACO; Squamosa promoter-binding-like protein 6
STRING	XP_008813721.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Aco007331.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]