PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007392.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 95aa    MW: 10328 Da    PI: 4.7721
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007392.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.26.1e-102443120
         GATA  1 CsnCgttkTplWRrgpdgnk 20
                 C+ C+ttkTplWR gp+g+k
  Aco007392.1 24 CADCRTTKTPLWRGGPSGPK 43
                 ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.4991841IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-41855IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-61941IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.62E-51942No hitNo description
PfamPF003202.9E-72443IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MDSLDEKGAG SVDRGSGGEE RRCCADCRTT KTPLWRGGPS GPKVRIPIEF LADFIFFCFC  60
PPFLLDPMLM RMMGGEEERA AVLLMALSSG FLYA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.15e-10GATA transcription factor 23