PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007447.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LSD

Protein Properties

Length: 163aa MW: 17923.8 Da PI: 9.7751

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007447.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.4	1e-12	33	56	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggCrtlL Y+rGA +VRC+ C+ Aco007447.1 33 CGGCRTLLIYTRGAENVRCSRCNL 56 **********************96 PP
2	zf-LSD1	40.6	4.1e-13	71	95	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr +L+YP+GA+ V+Ca+C+++ Aco007447.1 71 CGRCRRILMYPYGASTVKCAVCHHI 95 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-13	30	58	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-11	33	56	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.5E-12	68	98	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-12	71	95	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MQHDNLYFPL RVLSYNFKEY IKFTGTEMAQ LVCGGCRTLL IYTRGAENVR CSRCNLINSS 60 TTASRVAHVT CGRCRRILMY PYGASTVKCA VCHHITNVGM NNNSRLPLPS WRPNASTPLP 120 TPVNVAPSNS MRQTVIVENP MSVDENGKLV SNVVVGVTTK KT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020100354.1	1e-96	protein LSD1-like isoform X2
Swissprot	Q6ASS2	2e-45	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A199UI87	3e-95	A0A199UI87_ANACO; Protein LOL3
STRING	EMJ13362	1e-54	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	7e-46	LSD family protein

Link Out ? help Back to Top
Phytozome	Aco007447.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]