PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007497.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24386.9 Da    PI: 9.6646
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007497.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-2084138256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+ql  Le+ F ++++++ ++++eLA+kl+L+ rqV vWFqNrRa+ k
  Aco007497.1  84 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNRRARSK 138
                  788899***********************************************98 PP
2HD-ZIP_I/II108.26.1e-3584171188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl+k+q++lLE+sF ++++L+++ K+ela++L+l+prqv+vWFqnrRAR k+kq E++ye+Lk+++++l+een++L+++ eeLr
  Aco007497.1  84 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNRRARSKLKQNEVNYEMLKKCCERLSEENQKLKEKLEELR 171
                  69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2064138IPR009057Homeodomain-like
SuperFamilySSF466895.01E-2072141IPR009057Homeodomain-like
PROSITE profilePS5007117.31380140IPR001356Homeobox domain
SMARTSM003892.0E-1982144IPR001356Homeobox domain
PfamPF000461.0E-1784138IPR001356Homeobox domain
CDDcd000866.54E-1784141No hitNo description
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
SMARTSM003403.3E-10140183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTILCLGLGG QDGESRKPKR RREVDPRPPV KFDVLFPSQS NQNNKDMINE SVGNENYASL  60
CKSRSRSVNN GVESGGEDGN GCTRKKLRLT KDQLALLESS FVQHNTLNSS MKQELAHKLN  120
LSPRQVEVWF QNRRARSKLK QNEVNYEMLK KCCERLSEEN QKLKEKLEEL RLMRLKLPFY  180
VQQYQNEHTL IMCPSCKLKG EDDALASVKI SQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11522RKPKRRRE
28288TRKKLRL
3132140RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099545.11e-155homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-43HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A199VWQ21e-143A0A199VWQ2_ANACO; Homeobox-leucine zipper protein HAT14
STRINGLus100210645e-43(Linum usitatissimum)
STRINGLus100292938e-43(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-36homeobox from Arabidopsis thaliana