PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007521.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family E2F/DP
Protein Properties Length: 191aa    MW: 20904.7 Da    PI: 6.6292
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007521.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP726.4e-23126187167
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67 
                  r+e sL+llt++f++ll++se+g ++ln va+ L   +v  ++RRiYDi+NVLe+++liek+ kn +
  Aco007521.1 126 RYECSLGLLTKRFITLLHQSEDGFLDLNRVADVL---KV--QKRRIYDITNVLEGVGLIEKSLKNTV 187
                  6789******************************...88..********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-23123187IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.46E-16126187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-24126190IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.4E-20129187IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAGPHLHLRS PSPCPIPRPA AANRHFPLFP AAAATAAAGE DEDDRFPPRP PPETPIKGAG  60
KIKVETGYLE VERHEEEATF NVLSTGPEAM FQGEPKPLEH QSFVPDTHGP LEGVAANEVR  120
SPNNCRYECS LGLLTKRFIT LLHQSEDGFL DLNRVADVLK VQKRRIYDIT NVLEGVGLIE  180
KSLKNTVSRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-21125190672PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164LKVQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093863.11e-137transcription factor E2FB-like isoform X1
RefseqXP_020093864.11e-137transcription factor E2FB-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-29E2F transcription factor 1