PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007536.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 337aa MW: 35535.1 Da PI: 7.1643

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007536.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	52	112	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknk+ s Aco007536.1 52 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRPS 112 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	52	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	54	110	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDAAQWPQEM GLVKPMEEMV ASSGGGGLRV AGLPPQPPAP AGAERRAARP QKEQALNCPR 60 CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW TDGGSLRNVP VGGGSRKNKR PSSSSSSSSS 120 SSPSTSTSVT TTTSSTSSAT ALLPNISLSS PSSSSSLNTK LLREAQDLNL SFPHHHGLRH 180 DQFPEFPALE SAKSNSGGLR GLGSTFMPMP MPVPMPMPIL EYPTHGFPFP PTLTNFPVDG 240 NIGGGSGGGD GNDNSSNNND NNDNGVGGGE YGRIQEVQES SRLLFPFEEL KPVGGPSSTT 300 TGSNNSDHEQ FEHNRGQGVD PSPGFWSGIM GGGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	1e-48	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094003.1	0.0	dof zinc finger protein DOF1.8-like
Swissprot	Q9SXG8	1e-61	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A199VB40	1e-145	A0A199VB40_ANACO; Dof zinc finger protein DOF3.7
STRING	XP_008790518.1	3e-75	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco007536.1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]