PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007606.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family YABBY
Protein Properties Length: 183aa    MW: 20042.9 Da    PI: 9.407
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007606.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY115.31e-35181556134
        YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkve.eenlksnveke.esast 94 
                   seq+Cyv+CnfC+ +lavsvP +sl+k+vtvrCGhC +llsvn++    +  a++ ++ +  +        ll e       +l   + +  + +++
  Aco007606.1  18 LSEQLCYVHCNFCDSVLAVSVPCSSLLKTVTVRCGHCGNLLSVNMRALLLAAGANQ-FHFAQYPFlspthqtLLGEIPYPpPPSLVLDQPNVtSLSNN 114
                  69****************************************99888776655544.33333332333333322222222122333333332023334 PP

        YABBY  95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfik 134
                  + +++++   ed+e+p+ p  ++r PekrqrvPsaynrfik
  Aco007606.1 115 NGAATSVRGREDQELPQNPVvINRAPEKRQRVPSAYNRFIK 155
                  4455566889999***9998689*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.1E-4019155IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASSSATFPL EHLSPPPLSE QLCYVHCNFC DSVLAVSVPC SSLLKTVTVR CGHCGNLLSV  60
NMRALLLAAG ANQFHFAQYP FLSPTHQTLL GEIPYPPPPS LVLDQPNVTS LSNNNGAATS  120
VRGREDQELP QNPVVINRAP EKRQRVPSAY NRFIKGVRMF FSRTGSTPPL QRTWESLRSR  180
AR*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093491.11e-109protein YABBY 4-like
SwissprotQ01JG21e-43YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-43YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A199UIS32e-90A0A199UIS3_ANACO; Protein YABBY 5
STRINGXP_008787013.12e-56(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-29YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]