PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007886.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 581aa    MW: 61009.9 Da    PI: 5.0311
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007886.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-08169213144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r+ WT+eEd  l+ av++ G g+W++I +      Rt+ q+  rw
      Aco007886.1 169 RKLWTKEEDMELIAAVQKCGEGNWASILKGDFkHDRTPSQLSQRW 213
                      567************************974223566666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-14164218IPR009057Homeodomain-like
PROSITE profilePS5129414.827164221IPR017930Myb domain
SuperFamilySSF466891.59E-12166218IPR009057Homeodomain-like
SMARTSM007175.7E-10168219IPR001005SANT/Myb domain
PfamPF002492.4E-7169213IPR001005SANT/Myb domain
CDDcd116603.40E-14172218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MATEKKATIN EDDVSLLLQR YPATTILTLL QEVSQFASPK VDWNTLVKRT STGITSACEY  60
QMIWRHLAYK HILQEKIDDG AELLDDESDL EFEVEAVPVA DEETSSEVAA CVKVLCSSGS  120
EPGPISTNAE APLAQNIPDQ KQSLPVGTTA EELDGNGPAA SSGPPKKKRK LWTKEEDMEL  180
IAAVQKCGEG NWASILKGDF KHDRTPSQLS QRWGVIKRQA SLNQNNGNKS SSLASSEERK  240
AAQKALSLAI NMPMTGSLPT FLSGATNLTS QGSSTMSATL SEATPSSTPH PLNQLLQSAK  300
PLVPQKTLNP LIKPLNTSKK QAASNTKASS IGPNPLIQAA AFAAGGRIAT PSTAASLLKA  360
AQSKSAFHIR PRGLNLSSSV ATLKPSLAAT INIKQPLNAR HVRPVTAPSP PVVNSGTSST  420
SLKEKNQEVQ APEQAIEQTV STTKISNSQD NTKQGNGNGP ASINVDESLT KEVGDADTKD  480
LDESKANDQP TVSNSVVTEA TEADENKTVS NGAGGAQVSS EHALGPLTEA ACDSGGMNEG  540
KPENQVMDPE PKNEVSGDMD ANAKSAIGDH VGASSEKTDI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170PKKKRKL
2165170KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6641371e-142KM664137.1 Ananas bracteatus clone 48889 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111712.10.0uncharacterized protein LOC109726508 isoform X1
TrEMBLA0A2H3XBV21e-139A0A2H3XBV2_PHODC; uncharacterized protein LOC103701275
STRINGXP_008781504.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-51MYB_related family protein