PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 464aa    MW: 52191.9 Da    PI: 6.4098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.88.3e-93864591373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl +A+a+++++++ a  +L ++ ++as +gd++qR++ayf+ AL+ r+ +  s ly+++ +s+t+    +ee++a++ f+ +sP+++f+h+ta
  Aco007890.1  86 LIHLLLFAATAINKNNTSSAVDALHEIYKNASFHGDSIQRVVAYFADALSVRIPSPRSPLYHSIVVSPTP----EEEFSAFTEFYRASPYYQFAHFTA 179
                  689******************************************************************8....7899999***************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaI+ea+e+e      r+H+iDfd+s+G+QWp+L+q+L++++  ++p slRiTg+g+    s +eleet+ rL +fA+ + ++ f+f+ +  +   +
  Aco007890.1 180 NQAIVEAFENEekrngGRIHVIDFDVSYGFQWPSLIQSLSDKAssSKPISLRITGFGR----SVDELEETEMRLVNFASGCnNLFFKFEGI-LRG--S 270
                  **********98888889**********************999745555*********....9***************987369******6.443..3 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   + +++r+++  +l+Vnlv+ l++l  +s ++    +++L ++ sl P +vv++e+e + +  sF+ rf+e+l+yy+a+fdsl++ lp+es er ++E
  Aco007890.1 271 STCNDIRIEKYSTLVVNLVFYLQKLS-SSNEM----HDTLATIHSLHPSLVVLIEREGNQSPRSFVSRFMESLHYYAAMFDSLNECLPPESVERLSIE 363
                  44699*******************97.44444....559*********************************************************** PP

         GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.............eesgslvlgWkdrpLvsvS 371
                  +  lgrei+    +e  e    h ++e+ ++r+e++GF++++ls+++++qaklll+  + +g ++              +e  ++ lgW++r L+++S
  Aco007890.1 364 KNHLGREIKCGMDQEDGE---GHFKVESLKQRMERVGFEEMKLSSRTVSQAKLLLKIKS-HGSTMGcgsncggfrvlvrDEGREISLGWQERLLITAS 457
                  *********998888887...99999999*************************98654.33333322222233333434466777************ PP

         GRAS 372 aW 373
                   W
  Aco007890.1 458 GW 459
                  ** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.92860428IPR005202Transcription factor GRAS
PfamPF035142.8E-9086459IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNEGAGEELL SLSLGLNSSW CTNTTKMKRK AKDDHEYSNP ACNVTTMQDV EDNKFFNLLH  60
MRDQMLKHDP KRSNGALEGT TNGLQLIHLL LFAATAINKN NTSSAVDALH EIYKNASFHG  120
DSIQRVVAYF ADALSVRIPS PRSPLYHSIV VSPTPEEEFS AFTEFYRASP YYQFAHFTAN  180
QAIVEAFENE EKRNGGRIHV IDFDVSYGFQ WPSLIQSLSD KASSSKPISL RITGFGRSVD  240
ELEETEMRLV NFASGCNNLF FKFEGILRGS STCNDIRIEK YSTLVVNLVF YLQKLSSSNE  300
MHDTLATIHS LHPSLVVLIE REGNQSPRSF VSRFMESLHY YAAMFDSLNE CLPPESVERL  360
SIEKNHLGRE IKCGMDQEDG EGHFKVESLK QRMERVGFEE MKLSSRTVSQ AKLLLKIKSH  420
GSTMGCGSNC GGFRVLVRDE GREISLGWQE RLLITASGWS CRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-519446227381Protein SCARECROW
5b3h_A9e-529446226380Protein SCARECROW
5b3h_D9e-529446226380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6620871e-144KM662087.1 Ananas bracteatus clone 45421 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111384.10.0scarecrow-like protein 23 isoform X1
TrEMBLA0A199UJ360.0A0A199UJ36_ANACO; Scarecrow-like protein 23
STRINGXP_008784262.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.16e-56GRAS family protein