PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007925.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 202aa    MW: 22333 Da    PI: 5.5345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007925.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.74.1e-3581271128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  lppGf+F P+deelvv++L++kv+  +++  ++i+ v ++++++PwdL+ k+ +  + wyfF +++ ++        a  sgyW+    d++++s +g
  Aco007925.1   8 LPPGFHFFPSDEELVVHFLRRKVALLPCQP-DIIPVVdHLHRYDPWDLDGKALQAGNLWYFFNRTRDQS-------GASPSGYWSPLDADEPIVS-GG 96 
                  79*************************999.88999956999******9666667899****9986643.......36789**************.9* PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vglkktL+fy g+ap+g kt+Wvmhey+l
  Aco007925.1  97 KDVGLKKTLIFYVGEAPQGIKTNWVMHEYHL 127
                  *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-456165IPR003441NAC domain
PROSITE profilePS5100542.4088166IPR003441NAC domain
PfamPF023651.2E-219127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGEGTTKLPP GFHFFPSDEE LVVHFLRRKV ALLPCQPDII PVVDHLHRYD PWDLDGKALQ  60
AGNLWYFFNR TRDQSGASPS GYWSPLDADE PIVSGGKDVG LKKTLIFYVG EAPQGIKTNW  120
VMHEYHLVDG GGTSGTSSSS NRPSLKKRSH QRSEHKKWVV CRVYESSCGP PTGFGDDGTE  180
LSCLDEVFLS LDDLDEVSLP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-36816720169NAC domain-containing protein 19
3swm_B9e-36816720169NAC domain-containing protein 19
3swm_C9e-36816720169NAC domain-containing protein 19
3swm_D9e-36816720169NAC domain-containing protein 19
3swp_A9e-36816720169NAC domain-containing protein 19
3swp_B9e-36816720169NAC domain-containing protein 19
3swp_C9e-36816720169NAC domain-containing protein 19
3swp_D9e-36816720169NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KKRSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111675.11e-148NAC domain-containing protein 104-like
SwissprotQ8GWK68e-62NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A199UL991e-147A0A199UL99_ANACO; NAC transcription factor NAM-1
STRINGXP_008799070.11e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-63xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]