PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco008000.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 337aa MW: 37276.6 Da PI: 7.6203

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco008000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.3e-52	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+ +yLkkkv+ +k++l evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk++ + Aco008000.1 13 VPPGFRFHPTDEELLLFYLKKKVSFEKFDL-EVIREVDLNKIEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKSIRT- 108 69**************************.99**********963433332556*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++g++ktLvfy+grap+g+k+dW+mheyrl Aco008000.1 109 SYRKIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 141 8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-61	5	164	IPR003441	NAC domain
PROSITE profile	PS51005	57.892	13	164	IPR003441	NAC domain
Pfam	PF02365	3.4E-27	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAASASSSGA NGVPPGFRFH PTDEELLLFY LKKKVSFEKF DLEVIREVDL NKIEPWELQE 60 RCRIGSTPQN EWYFFSHKDR KYPTGSRTNR ATNAGFWKAT GRDKSIRTSY RKIGMRKTLV 120 FYRGRAPHGQ KSDWIMHEYR LDDGDDPQAG NSEDGWVVCR VFKKKCFFKS GAAVEGSTSQ 180 SSTTEAAAHL LLPPPTTTAA AAAFHAAQQI HYSSYLHHPH HHHSFFYSHH LPPQPPPPPP 240 PPPPPPPPPP PPPPLHHHDL FAIPPHHRAP APAFEFSASE MAEEEGDSGG GRDQEGRGAT 300 QGPTEWAVAL DGFNATAAAT VQRGGHEMDL WGSYGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	13	165	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	13	165	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	13	165	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	13	165	17	166	NO APICAL MERISTEM PROTEIN
4dul_A	2e-51	13	165	17	166	NAC domain-containing protein 19
4dul_B	2e-51	13	165	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111471.1	1e-133	protein BEARSKIN2-like
Swissprot	Q9SV87	1e-103	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A199UUZ7	1e-140	A0A199UUZ7_ANACO; Protein BEARSKIN2 (Fragment)
STRING	Pavir.J07268.1.p	1e-126	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	5e-95	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	Aco008000.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]