PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008004.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ZF-HD
Protein Properties Length: 252aa    MW: 28100.7 Da    PI: 6.57
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008004.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3266121359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   vrY+eClkNhAas+Gg+a+DGCgEfmp+ g+egt++al+C+AC CHRnFHR+ev  
  Aco008004.1  66 VVRYRECLKNHAASIGGTALDGCGEFMPN-GAEGTIEALQCSACSCHRNFHRKEVMG 121
                  589*************************8.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2066119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2967119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-3068119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.62869118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.89E-18172243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-29173243IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-26182238IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLSNHEGGN TNNNPTMSSS YVGHVIGHQH QGPQPISTLN PEEEEEEEEG EGEGEEEEEE  60
EKVVVVVRYR ECLKNHAASI GGTALDGCGE FMPNGAEGTI EALQCSACSC HRNFHRKEVM  120
GQMGQMGLLG QAAFGPAGPY RFIIPRGCSP AAHHHMVMPL GAMHASEYNE EVERRSPAML  180
RKKRFRTKFS QDQKEKMMGF AERVGWRIQR VEESVVQQFC QEVGVKRRVL KVWMHNNKHS  240
LAKKGSLQLQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-231832401875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111280.10.0zinc-finger homeodomain protein 3-like
SwissprotQ9M9S01e-63ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A199UK151e-149A0A199UK15_ANACO; Zinc-finger homeodomain protein 4
STRINGXP_008808961.13e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-64homeobox protein 21