PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008030.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 563aa    MW: 62520.8 Da    PI: 8.7247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11e-1699182190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  kfY++YA++vGF v++++s+ + ++g +   +++C k g+r+ e k      r+r++  t+C ak++vk++ dg  +++  +l+HnH+++
  Aco008030.1  99 KFYKRYARRVGFGVSVRRSSFT-KEGLCLYLELMCCKGGRRRAEPKF-----RKRTSATTNCPAKIRVKLWGDGLLHLELASLDHNHPVS 182
                  6****************99998.6777***************99988.....99999******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1599183IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.347291327IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-5291323IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014302329IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEAEESSAAA AAAAARWRDP RRARLAPRRD LNSQGIAGDA SASGPSNAEF MEGDSPITAA  60
AAAADDDDDP PEDDDDDDDG YDGVPEVGMV FKSHQDASKF YKRYARRVGF GVSVRRSSFT  120
KEGLCLYLEL MCCKGGRRRA EPKFRKRTSA TTNCPAKIRV KLWGDGLLHL ELASLDHNHP  180
VSPSMARFLS CYKQLSGAAK RRPRAAPTAA APPPSGMPID RLGELEALLF AESRSRSFVY  240
TLNMFKKFQD EIEAIMYCHA SLVSMDGSTS TFDVKECIFL DDGKRTMNKN YLVTCGTEEK  300
NVYCICGSFQ FRGILCRHTL SVFKLQQVHE IPSQYILDRW KKEFKRLHVM ARSSNDFIAN  360
NRVDRYDYLS MRCLQLVEVG VLSDKYQLAL KLIREVEKFL LSDSTHDDTQ PKIKPRVTKA  420
NKVNASSNEN VGVIMASENG NEGRRRGRAP QEKEPQEGAN PSIVPPGSYF SLPMNGQQSV  480
SNQAATRPSI VYMFPGGFDP QMFGNGPMMP WIYQQMFQGA QKPKETPGSG TGQTARKRRI  540
YRGHKPMEAT QEPSEPPGPM TG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111787.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A199UEG60.0A0A199UEG6_ANACO; Protein FAR1-RELATED SEQUENCE 6
STRINGOMERI02G22170.30.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.13e-26FAR1-related sequence 6