PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008183.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HB-other
Protein Properties Length: 343aa    MW: 36882 Da    PI: 5.1483
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008183.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-072933242354
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp+++++++L +++gL+ +q+ +WF N+R +
  Aco008183.1 293 PYPTEDDKAQLVEETGLQLKQINNWFINQRKR 324
                  8*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-1775119IPR005540KNOX1
PfamPF037909.9E-1678117IPR005540KNOX1
SMARTSM012561.1E-24133188IPR005541KNOX2
PfamPF037912.7E-17142187IPR005541KNOX2
SMARTSM011880.0036245266IPR005539ELK domain
PROSITE profilePS512139.271245265IPR005539ELK domain
PROSITE profilePS5007111.467265328IPR001356Homeobox domain
SMARTSM003899.3E-11267332IPR001356Homeobox domain
SuperFamilySSF466891.88E-15267333IPR009057Homeodomain-like
CDDcd000861.02E-11268329No hitNo description
Gene3DG3DSA:1.10.10.602.2E-24272330IPR009057Homeodomain-like
PfamPF059203.0E-18285324IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAFHAAPAPA PIHGGGDDDD EELGSTPVEG GAAPSWLLRR RHGVGVGEVQ VSIGGDPEVV  60
GGGGGGGGGG GGEGDARKGE IAAHPLFEQL LSAHVGCLRI ATPVDQLPRI DAQLAQSRGV  120
AGKHAVVLGG AGGSEGQAIG DELDHFMTHY VLLLCSFKEQ LQQHVRVHAM EAVVACWELE  180
QSLQSLTGVS PGEGTGATMS DDDDDQEDSE TNLFDGTLDG LDSMGFGPLV PTESERSLME  240
RVRQELKHEF KQGYKEKIVD IREEILRKRR AGKLPGDSTS ALKVWWQSHC NWPYPTEDDK  300
AQLVEETGLQ LKQINNWFIN QRKRNWHTNQ SSSSSSKSKR KR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321341RKRNWHTNQSSSSSSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6671422e-78KM667142.1 Ananas bracteatus clone 52544c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109892.10.0homeobox protein knotted-1-like 2 isoform X1
RefseqXP_020109893.10.0homeobox protein knotted-1-like 2 isoform X2
SwissprotP480001e-153KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A199UD310.0A0A199UD31_ANACO; Homeobox protein knotted-1-like 3
STRINGGSMUA_Achr7P05170_0011e-163(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-141KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]