PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008196.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 671aa    MW: 72994.8 Da    PI: 6.5144
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008196.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.35.4e-16216256142
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 
                  kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lmk   L 
  Aco008196.1 216 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMKKYRLY 256
                  79*******************.**************987665 PP
2Response_reg647.3e-22231391109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT......TTSEEEEEESTTTHHHHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee......pklpiivvtahgeeedale 88 
                   vl vdD+p+ ++ll+++l + +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+    e +      ++l   v++++ge + + +
   Aco008196.1  23 VLAVDDDPTCLKLLETLLIRCKY-HVTTTSQAITALKLLRENKdrFDLVISDVHMPDMDGFKLLELVgLEMDlpvitnESLARAVLSGNGETQAVMK 118
                   799********************.***************888889*********************977777878877789999************* PP

                   HHHTTESEEEESS--HHHHHH CS
  Response_reg  89 alkaGakdflsKpfdpeelvk 109
                    +  Ga d+l Kp+ +eel++
   Aco008196.1 119 GITHGACDYLLKPVRIEELRN 139
                   *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.6E-1471669IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.2E-3720152No hitNo description
SuperFamilySSF521723.42E-3020151IPR011006CheY-like superfamily
SMARTSM004482.6E-2621141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.72622145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1823140IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.60E-2424144No hitNo description
Gene3DG3DSA:1.10.10.601.9E-15213258IPR009057Homeodomain-like
SuperFamilySSF466892.15E-8214259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-12216254IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MTVEEIKVKG EGAGDQFPVG MRVLAVDDDP TCLKLLETLL IRCKYHVTTT SQAITALKLL  60
RENKDRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVITNE SLARAVLSGN GETQAVMKGI  120
THGACDYLLK PVRIEELRNI WQHVVRRRKF DGRSQSNLEN GGEDGQKSSQ INHEGEQGAV  180
DRNGKLKKKR KEQNGEEEED SDENPRENED PSAQKKPRVV WSVELHRKFV AAVNQLGIDK  240
AVPKRILDLM KKYRLYLKRL SAVTSQQANI AAALGGRNPS FIHMSSLESF RNYHSLGSTR  300
HLPSVASCQA NGLLGRMNTP TAFGVHGLLP SQAVQQIART QNNPSNHTKD LEKIQAAYPQ  360
GVHQGNLFQG FQESNKLFSA GFNGGGLANG SCGDAYANAA NGSMLVQANK IPTQNGVLGN  420
SPSFRTRVGE AAQFPDLSRC DNTWQSVVSS KYPAATLPVN DSFNHNNDLT PCSIGDSIAP  480
MPSHIEGAVL CESPSNLEAA VNRNPVIGSD LRNPNPISSL GGSAMPISSL GEDPTTTSFD  540
FRSMSNANPR LDHTANASTS SLSSILPNLQ INDPTAQKQG FCSKQMDASL IGEANFGAPI  600
LTHDWRIDSR SSNRDQIQGK DDYASGMTKL QNGLSRSIDD IVSAMLKSDR DEFTAFVDGD  660
MGYDLYTLST *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6656831e-152KM665683.1 Ananas bracteatus clone 50868 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109821.10.0two-component response regulator ORR24-like
RefseqXP_020109822.10.0two-component response regulator ORR24-like
RefseqXP_020109823.10.0two-component response regulator ORR24-like
TrEMBLA0A199VJ960.0A0A199VJ96_ANACO; Two-component response regulator ORR24 (Fragment)
STRINGGSMUA_Achr10P06040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-93response regulator 12