PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008206.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 400aa    MW: 43886.9 Da    PI: 8.9532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008206.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-3075131259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK+vk+se++rsYYrCt ++C +kkk+er   d+++veitY+g+Hnhe
  Aco008206.1  75 SDGYSWRKYGQKQVKSSENSRSYYRCTDTSCLAKKKIERRP-DGRLVEITYKGRHNHE 131
                  7****************************************.***************8 PP
2WRKY352.8e-11250272123
                  ---SS-EEEEEEE--TT-SS-EE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                  ++Dgy+WrKYGqK vkg+++pr+
  Aco008206.1 250 VNDGYRWRKYGQKIVKGNPNPRA 272
                  58********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-2672133IPR003657WRKY domain
SuperFamilySSF1182904.05E-2374133IPR003657WRKY domain
SMARTSM007741.0E-3174132IPR003657WRKY domain
PROSITE profilePS5081123.22775133IPR003657WRKY domain
PfamPF031066.4E-2376131IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-11235272IPR003657WRKY domain
SuperFamilySSF1182906.93E-13244292IPR003657WRKY domain
PROSITE profilePS5081117.396245292IPR003657WRKY domain
SMARTSM007742.8E-14250291IPR003657WRKY domain
PfamPF031063.4E-7251272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MTHQAVLATV TAQAQIQLQA VIHPSPSSEP LPDSIPQKSP SFSEEKVFTP EKEKPSSSDQ  60
KPPQPSLTVV KTGTSDGYSW RKYGQKQVKS SENSRSYYRC TDTSCLAKKK IERRPDGRLV  120
EITYKGRHNH EPPQKPKCPK ERGSQSCGPP RESESSENTK ELDPSTRKTE KNSAGETPER  180
NFYCSSDCEG NAGNKIEEDL WKEPDPKRRQ VIWLFIKPMI ESATPCPAPV LKTVREPKII  240
VQAASDAASV NDGYRWRKYG QKIVKGNPNP RASDDAKNIV ITYEGKHNHD SPSLKNGNDS  300
RASPHHLAAK VAVKGEQTNK PTISSDQNPM EESKPVLDGK SVGDKALELG GEKALESAQT  360
LLSIGFNSSS GDHDERSNSG GIKHPLFNEK PAAVQVQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-1476293878Probable WRKY transcription factor 4
2lex_A3e-1476293878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109889.10.0probable WRKY transcription factor 33 isoform X1
TrEMBLA0A199VUI90.0A0A199VUI9_ANACO; Putative WRKY transcription factor 4
STRINGXP_008776488.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.17e-53WRKY DNA-binding protein 4