PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008265.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 487aa    MW: 52420.4 Da    PI: 7.1241
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008265.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.6e-41196272177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cq+egC adls ak+yhrrhkvCe+hska+vv+++gl+qrfCqqCsrfh lsefDe+krsCr+rLa+hn+rrrk+q
  Aco008265.1 196 RCQAEGCGADLSGAKHYHRRHKVCEFHSKAAVVAAKGLQQRFCQQCSRFHVLSEFDEAKRSCRKRLADHNRRRRKPQ 272
                  6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-33189258IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.599194271IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-39195275IPR004333Transcription factor, SBP-box
PfamPF031102.0E-31197270IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MMNRANPNDP YVPSMMMSFV GLDPNPNPNP NPTNPTPQRL HLSDPWDPSP SSAAFFPNSG  60
VGGGVTFLDY PPPPLLPFNT TTAAAAANIN ANPNSPFYPT SPTHDYPPSA GLVKREADAA  120
ALLRPAIGLN LGHRTYFPSG GDSAAVAIDR LFSARPPAHA VPRGLLYALG GLGGSGAHNP  180
GYQHYHHHHH HHQPPRCQAE GCGADLSGAK HYHRRHKVCE FHSKAAVVAA KGLQQRFCQQ  240
CSRFHVLSEF DEAKRSCRKR LADHNRRRRK PQGSTQSTDS SNQKNSNCSS SQKSKQSTKP  300
TRDTSTITTK STTTISNASV SLEGQNKGTH YRNGPALSLG GVGVGVGVGV GVLAMESKGG  360
NNMDSDFMYQ QSQGLHYASF VEEKVSEDEE EDDDEEEEEE QRHHQEILHP FSSAESTNNN  420
TFFHHHNLFS SAAAAAAAAS ADGSHSTTEG GGGGDTATAT LHHHHHHHNH HQGLHLGQAM  480
FEVDFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-291972701184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253270KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109795.10.0protein LIGULELESS 1-like
TrEMBLA0A199W7Z50.0A0A199W7Z5_ANACO; Squamosa promoter-binding-like protein 8
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-43squamosa promoter binding protein-like 8