PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008321.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 418aa    MW: 44721 Da    PI: 9.6463
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008321.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.53e-41126202278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  Aco008321.1 126 CQVEGCNIDLSSAKDYHRKHRVCESHSKCPKVTVNGLERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 202
                  **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-32122187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.522123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-38125203IPR004333Transcription factor, SBP-box
PfamPF031102.0E-31126199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEWSAKTPLL WDWDNPVAAA AEEAAAAAQQ RIDDGSIYSS GGSSSSVVDP TLKKEPAISP  60
TAKNTAAAPA AGAGAGVAAI GLRLGKRTYF EDASQSSSSS SAAAAAAAAA LKKAKVSQAS  120
ALSSFCQVEG CNIDLSSAKD YHRKHRVCES HSKCPKVTVN GLERRFCQQC SRFHALSEFD  180
QKKRSCRRRL SDHNARRRKP QPVAFSFSSS RLSSSFYDEG RQISFVWSKP PTDQMRPLTS  240
SAWGGSSDKL SQMKESWIKS TKAGGVDGQQ LQMSNSKLSS PFSTLCHDVD RLMPLKGKVA  300
KVLKQGPEAS VTASNLGGAP DLQRALSLLS SSSWGSPDPG TASLIQFVDT NQISASQPAP  360
SYLGNSTSAY HWHDKPLLAQ QQPEIPFAAN SNVSPLQEFQ LLKSPYETSF FDTGRIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-271251991084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181198KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625951e-157KM662595.1 Ananas bracteatus clone 46434 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109403.10.0squamosa promoter-binding-like protein 11 isoform X2
SwissprotA2YGR55e-89SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A199UKG00.0A0A199UKG0_ANACO; Squamosa promoter-binding-like protein 12
STRINGXP_008789607.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-46squamosa promoter binding protein-like 2