PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008323.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 159aa    MW: 17124.2 Da    PI: 8.9818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008323.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-212574255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +gr++AeIrdp +   r+r++lg+f+t+e Aa+a++aa+++++g
  Aco008323.1 25 RYRGVRQRP-WGRYAAEIRDPAK---RRRVWLGTFDTPEAAARAYDAAALRFRG 74
                 6********.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-152574IPR001471AP2/ERF domain
PROSITE profilePS5103225.1322582IPR001471AP2/ERF domain
CDDcd000188.81E-212581No hitNo description
Gene3DG3DSA:3.30.730.101.1E-322583IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-232583IPR016177DNA-binding domain
SMARTSM003803.2E-402588IPR001471AP2/ERF domain
PRINTSPR003678.8E-112637IPR001471AP2/ERF domain
PRINTSPR003678.8E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGHKEEEEEL EKCNCRGGEV IMGVRYRGVR QRPWGRYAAE IRDPAKRRRV WLGTFDTPEA  60
AARAYDAAAL RFRGPKAKTN FPPSPPPPPA AVCSSPGFTL LLRTAPPACL RHSDSDSSSN  120
SNSNSSSSSS AAAIAMSRGF PFDIDLNLPP PPPSEAAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212382363ATERF1
3gcc_A1e-212382363ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546622e-51AK354662.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009L21.
GenBankAK3595132e-51AK359513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1098G12.
GenBankAK3641812e-51AK364181.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022H04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109754.11e-111ethylene-responsive transcription factor 11-like
TrEMBLA0A199UKH41e-110A0A199UKH4_ANACO; Ethylene-responsive transcription factor 10
STRINGGSMUA_Achr8P06870_0011e-29(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-24ERF domain protein 11