PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008359.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27535.3 Da    PI: 7.7216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008359.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.4e-261161151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRr g+lKKA+EL vLCda+v v+ifss+gk++e++s
  Aco008359.1 11 KRIENPTSRQVTFSKRRGGLLKKANELAVLCDAQVGVVIFSSSGKMFEFCS 61
                 79***********************************************96 PP
2K-box86.65.1e-29781745100
        K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++++  e  ++++   e++++k+e+++Lq + R++ GedL+sL++++L+qLeqqLe ++ k+R++K++ll++q+++l++ke+ l+++n+ L++++ e
  Aco008359.1  78 TSTRfEEIDNQQHIFCEITRMKSENDKLQASMRQYTGEDLTSLTMNDLNQLEQQLEFAVDKVRARKHQLLTQQLDNLRRKEHILEDQNNHLSRMISE 174
                  5555566778999999****************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-41362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.763363IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-32482IPR002100Transcription factor, MADS-box
CDDcd002653.54E-43475No hitNo description
PRINTSPR004041.2E-28525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251259IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-284061IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2684172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.25388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPMGRGKIEI KRIENPTSRQ VTFSKRRGGL LKKANELAVL CDAQVGVVIF SSSGKMFEFC  60
SPPALSMRHL IDRYQRVTST RFEEIDNQQH IFCEITRMKS ENDKLQASMR QYTGEDLTSL  120
TMNDLNQLEQ QLEFAVDKVR ARKHQLLTQQ LDNLRRKEHI LEDQNNHLSR MISENQAVEH  180
AAMDQKVGDM AMLDHFGHFY GDDASRTLLQ LSPQLHAFRL QPTQPNLQDP SLHGYGLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17362160MEF2 CHIMERA
6byy_B3e-17362160MEF2 CHIMERA
6byy_C3e-17362160MEF2 CHIMERA
6byy_D3e-17362160MEF2 CHIMERA
6bz1_A3e-17362160MEF2 CHIMERA
6bz1_B3e-17362160MEF2 CHIMERA
6bz1_C3e-17362160MEF2 CHIMERA
6bz1_D3e-17362160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109779.11e-179MADS-box protein AeAP3-2-like isoform X1
SwissprotQ6H7111e-105MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLA0A2H3Z3T11e-132A0A2H3Z3T1_PHODC; MADS-box protein AeAP3-2-like
STRINGXP_008807981.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-53MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li M,Sun P,Zhou H,Chen S,Yu S
    Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).
    Theor. Appl. Genet., 2011. 123(3): p. 411-20
    [PMID:21512773]
  3. Yin LL,Xue HW
    The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development.
    Plant Cell, 2012. 24(3): p. 1049-65
    [PMID:22408076]
  4. Yang X, et al.
    Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).
    PLoS ONE, 2012. 7(12): p. e51435
    [PMID:23251532]
  5. Nayar S,Sharma R,Tyagi AK,Kapoor S
    Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.
    J. Exp. Bot., 2013. 64(14): p. 4239-53
    [PMID:23929654]
  6. Nayar S,Kapoor M,Kapoor S
    Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
    J. Exp. Bot., 2014. 65(18): p. 5339-50
    [PMID:25096923]
  7. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]