PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008421.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YA
Protein Properties Length: 220aa    MW: 23972.8 Da    PI: 9.3848
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008421.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.35.2e-33104159258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  ep+YVNaKQyq+Il+RRq+Rak+e+e+kl +ksrkpylheSRh hA+rR+RgsgGrF
  Aco008421.1 104 EPVYVNAKQYQGILRRRQSRAKAESENKL-IKSRKPYLHESRHLHAVRRARGSGGRF 159
                  8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-34101162IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.05102162IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-28104159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-23105127IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860107127IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-23136159IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTSSNQSSSD YSESNEQQKQ SNSVLHSGSS ATGQYYPGPT SVPMEYMVPI GHIEMGQTVA  60
QVAYPFVDPY CRGIIAAYGA QTAVYHPSMG LPPISMLMTN DAVEPVYVNA KQYQGILRRR  120
QSRAKAESEN KLIKSRKPYL HESRHLHAVR RARGSGGRFI KSKSTEKQDN EADPHEMQKP  180
LSMNHPSIDP SENKAKAAEV SGFEKSPLNN GAASAQSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20104183375NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109792.11e-162nuclear transcription factor Y subunit A-7-like
TrEMBLA0A2H3Y7S29e-61A0A2H3Y7S2_PHODC; nuclear transcription factor Y subunit A-7-like
STRINGXP_008794453.11e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.18e-38nuclear factor Y, subunit A9