PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008426.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 882aa    MW: 98002.2 Da    PI: 6.4714
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008426.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.43.7e-25127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Aco008426.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLAAGDSVIFI--WNDNNQ 220
                  99*****************************8544444..49************************************************..777777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco008426.1 221 LLLGIRRA 228
                  8***9997 PP
2Auxin_resp121.37e-40253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Aco008426.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-21126227No hitNo description
PfamPF023622.0E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.324127229IPR003340B3 DNA binding domain
SMARTSM010192.1E-25127229IPR003340B3 DNA binding domain
PfamPF065078.4E-35253336IPR010525Auxin response factor
PfamPF023091.7E-8741834IPR033389AUX/IAA domain
SuperFamilySSF542771.5E-7744824No hitNo description
PROSITE profilePS5174522.354748832IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MRLSTSGLTN QPQEEEQRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPTELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELMAK DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLAAGDS VIFIWNDNNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSLHDGANS AFQSLNFQGL GVGPWMHPRL DSSMLGLQSD  420
MYQTIAAAAL QEIRDPSKQL SPNMLQFQQP QNMTSRSTLL PSQIIQQGQP QLQQPFLQTI  480
PENKIQSHVQ SNYLQQCQPI SDQRQQIQQV EQKQLHQQAQ QQKHLSDHQQ VPNVVSALSN  540
LTSSPQSQMQ AISFSQPQNY SDANNNSLSA PTATTLHNIL MPFSQEAPSN LLNMPRSTPM  600
AVSNPWSSKR VAVESVLSSI PQCFMPQMEQ QLEATQPNMS QHSATQLAPF PGRECSVDQD  660
GSTDTQNNLL FGVNIDPSSL LMQSSMLGLR SVDNGNDANS MPYSACNYLG STGNDFPLNQ  720
ALTSSNCLDE SGFLQSTGNV DQVNPQRGTF VKVSKPGTFG RSLDITKFSS YNELRSELGR  780
LFGLEGQLEE PLRSGWQLVF VDRENDVLLV GDDPWQEFVN SVSCIKILSP QEVQQMGKQD  840
TDLLNSAHIK RLPGNNCEGY VSRPDTRSLS NGMTPVGSLE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109211.10.0auxin response factor 17-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A199V3780.0A0A199V378_ANACO; Auxin response factor
STRINGXP_008776642.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]