PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008451.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 834aa    MW: 93262.9 Da    PI: 9.1374
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008451.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07182201525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +Cr+f+  G C++G++C+F H
  Aco008451.1 182 PCRDFSS-GRCRRGNQCRFLH 201
                  8******.************* PP
2zf-CCCH26.51.1e-08277300226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   te+C +f++ G C++G++C+F+H 
  Aco008451.1 277 STERCYDFSK-GRCQRGANCRFIHH 300
                  59********.*************7 PP
3zf-CCCH24.83.8e-08358378425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  e+C+ffa+ G C++G+rC+F+H
  Aco008451.1 358 EPCKFFAE-GRCHRGERCRFSH 378
                  89******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-4177203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6181207IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5181201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943182204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6270301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272275302IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4275301IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6277300IPR000571Zinc finger, CCCH-type
SMARTSM003560.0051354380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497354381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6356379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5358379IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MNDSARKRAS KWDLKEGPPE EVKTEFSVQR DNSETDQKFT DWSDMEDGEN NSGSSKAFPL  60
GSQPPEEAFY TESGNKIDSK NSLWNPDGEN QSMVKNADKS GMVEGWGTAI KSSMSPGLNP  120
WRQHSCSPSP RGGSNKPSRK RSRTRSRSRS RSRSRSRSPY GQKHGIERRG DRGRTVGVLV  180
QPCRDFSSGR CRRGNQCRFL HEDSDRRHFD RPYQTDLREG RSERAKYHRN EIENDFSDSR  240
EHNYHSRNKP SQRQGGGHFD EGGSWEKLDP RRNNNKSTER CYDFSKGRCQ RGANCRFIHH  300
EASSHSGYSI KDEAREPRER ERERERERER ERSHYNSRNN SSEVSFGRST ETKRVNDEPC  360
KFFAEGRCHR GERCRFSHQN NMEVGTNDDK WNTNHDDLSR NDSSWGDRTA IVDATNSPQN  420
APPVSREMKI TVEASGFKDG SGPALAGPNL GHPSQNQFIN PGVPNVQNFS QSVPAMPFNG  480
QMQQVAFPMH PVGQSHFIAQ QAPPHIGLNQ QGINLGGQIS QSRSQLLQSN GQGQQEKLFG  540
GQGLHNLSIQ NVKIQQTLSS VEGQSQEKVI VPMPQNREGI QNVQVGKNQF ETPHTTSSLE  600
IKLLEPGSGT SIAPKVVTSE QAARITDLSA SLAQFFGSAA LNASPMGLVM PLNPTVPSSV  660
STEQKNPLME ELNRNSANLV PLTIADGKRD SKSEDHEIVE TKQVETNAPS KEVHEKELVQ  720
GKEEEQNGVP EEANADVVAD GENKKSKDSK ALKMFKCALV EFVKDVLKPS WKEGHLSKEA  780
HKTIVKKVVE KVTGAIQGPN IPQTQEKIDL YLSNSKAKLN KLVQAYVEKY VKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RSRSRSRSR
2321331RERERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109146.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_020109147.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_020109148.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_020109149.10.0zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A199UFP20.0A0A199UFP2_ANACO; Zinc finger CCCH domain-containing protein 55
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-15C3H family protein