PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008469.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 426aa    MW: 46433.1 Da    PI: 9.2474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008469.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05192214223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C++Cgk F r++ L+ H  + H
  Aco008469.1 192 SCHKCGKQFLRWDALEEHHLSkH 214
                  7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.12191219IPR007087Zinc finger, C2H2
PROSITE patternPS000280193214IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-21216424No hitNo description
Gene3DG3DSA:3.90.228.105.7E-8226401IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPPKVWFALK KSLPCKSEAL DVHDPKPRNQ LSTMLKRRRR RPCGGSGCSR SIENLKDVIH  60
GGKRHTERPT TTTTSCSPRS IGSSEFLGPI AHEVVLNDSM CELKITHGCA AAAAAAAASA  120
INGGGDVGAT FVGSLRPGTP GPSYLRKSSL SASDSFALGN GEGSNHEGCF SGNRASSCSE  180
GGSSQRHSTS LSCHKCGKQF LRWDALEEHH LSKHAVTELQ EGDSCRRIVE IICKASWLKS  240
EISCGRIERV LKVHNMQRTL ARFEEYRETV KLKASKLSKK HPRCLADGNE LLRFFCTTIY  300
CSLGTNSSSN LCTSSKCNVC RIIRHGFSTK KEMKDGIGVF TTSTSKRALE TIEINEDDAS  360
MRKALLICRV IAGRVHKPME NLQDFVVQPG FDSVAGRVGL YSNIEELYLL NPRALLPCFV  420
VISRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441LKRRRRRP
23540KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109203.10.0uncharacterized protein LOC109724705
TrEMBLA0A199UFL70.0A0A199UFL7_ANACO; Uncharacterized protein
STRINGXP_010267823.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-152C2H2 family protein