PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008479.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family DBB
Protein Properties Length: 412aa    MW: 43607.2 Da    PI: 4.7915
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008479.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-071553639
     zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                 C++++   ++ +Ce+++ +lC +C    H g       Ht+
  Aco008479.1 15 CELCPGT-ARMYCESDEAMLCWECDARVH-GanflvarHTR 53
                 ******9.******************999.54777777775 PP
2zf-B_box231.7e-07117155639
     zf-B_box   6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 
                  C++++   ++ +Ce+++ +lC +C    H g       Ht+
  Aco008479.1 117 CELCPGT-ARMYCESDEAMLCWECDARVH-GanflvarHTR 155
                  ******9.******************999.54777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-101056IPR000315B-box-type zinc finger
CDDcd000214.90E-41556No hitNo description
PfamPF006433.8E-51553IPR000315B-box-type zinc finger
SMARTSM003362.0E-10112158IPR000315B-box-type zinc finger
CDDcd000214.90E-4117158No hitNo description
PfamPF006433.8E-5117155IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDRGREKEKG KGKGCELCPG TARMYCESDE AMLCWECDAR VHGANFLVAR HTRALLCRTC  60
QSPTPWRASG SRLGPSVSLC HRCSPHSHSQ SPADDLRRGG EAGGRSEEKE KGKGKGCELC  120
PGTARMYCES DEAMLCWECD ARVHGANFLV ARHTRALLCR TCQSPTPWRA SGSRLGPSVS  180
LCHRCSPHSH SQSPADDLRR GGEAGGRSES EAEEGEEEQD DDEDDGDGED SEDSAEEEEG  240
DNQVVPWSPP PPPTTTTTSS SSSEEEEEEA EESSRAEIGA GSGGGSGSSL KRMRDNADLV  300
SHPQDDLPSS SLQLSRFQSA QPPPLSGRAS AADDDDDEAT SGRGGGGGGG GGSNSAGFRL  360
PKDRRRLPGH LVRLDPAQPT GSTRRSQPTT AGEPCGPSRA TIATIDFVQA T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340352SGRGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109186.11e-140zinc finger protein CONSTANS-LIKE 4-like isoform X2
TrEMBLA0A199UFG11e-134A0A199UFG1_ANACO; Zinc finger protein CONSTANS-LIKE 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.16e-10CONSTANS-like 2