PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008508.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 487aa    MW: 53790 Da    PI: 6.5097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008508.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00141131121
                 EEETTTTEEESSHHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                 ++C++CgksF++  +L  H+r
  Aco008508.1 11 HRCKHCGKSFPSGRSLGGHMR 31
                 79**************99998 PP
2zf-C2H220.41.3e-0692113223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  Cgk+F ++ +L  H+r+H
  Aco008508.1  92 SCRECGKRFASWKSLFGHMRSH 113
                  6********************9 PP
3zf-C2H210.80.0015400422123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cg+sF +   L  H ++H
  Aco008508.1 400 HECLICGRSFASGQALGGHKKSH 422
                  78************999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.3E-101133IPR007087Zinc finger, C2H2
SMARTSM003550.00911133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-41133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-101133No hitNo description
PROSITE profilePS5015710.8871138IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-1086113No hitNo description
SMARTSM003550.004291113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07491118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-492114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-593113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576674.71E-6352422No hitNo description
PfamPF139122.4E-9354378IPR007087Zinc finger, C2H2
SMARTSM003550.52354376IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515354376IPR007087Zinc finger, C2H2
PROSITE patternPS000280356377IPR007087Zinc finger, C2H2
PfamPF139129.1E-11400423IPR007087Zinc finger, C2H2
SMARTSM003550.23400422IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388400424IPR007087Zinc finger, C2H2
PROSITE patternPS000280402422IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
METERRCHQK HRCKHCGKSF PSGRSLGGHM RCHAPPAAPA TASPASEPDD KPQSGRSVVG  60
VFSPAYGLRQ NPKKTWWISA DNVPAHGGAN KSCRECGKRF ASWKSLFGHM RSHSLKQLST  120
IEQEEEEEQE EEEEEEEEQQ QQQQQQQEQE QQSKAEEEEE ASRSRSDTVF GNVHVPRKRR  180
RSRRAIASCS VSASEEYEKE DEEGAITLLM LSRDVRCWSS GGGGAGLIHC VQESSDKNSV  240
VVENKRVDLA SDESEETKKA KRTRRSQLDD LRNGRRSRGI EKVEESDASD NGLIGDHGFE  300
QFDDTRRDPS SNSASEFWIK REGSELEASL HGASNGDFDD DKLAEKRRRK SRSFECVDCD  360
KAFHSYQALG GHRASHHKRI DQNADLIARR GGSGKKAADH ECLICGRSFA SGQALGGHKK  420
SHLGLIQQQK LPEKPDALLD LNIPASTTEG DCVSTNNGSI LSSIYGGLAE AACSMQHEPL  480
VGVLSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180RKRRR
2176181RKRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095193.10.0zinc finger protein ZAT9
TrEMBLA0A199W4E10.0A0A199W4E1_ANACO; Zinc finger protein ZAT1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-20C2H2-like zinc finger protein