PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008552.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 167aa    MW: 16930.9 Da    PI: 9.9591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008552.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162951123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ CgksF +   L  H  +H
  Aco008552.1 29 YRCSVCGKSFGSYQALGGHKTSH 51
                 9*********9999888887776 PP
2zf-C2H212.20.0005685107123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C k F++   L  H r+H
  Aco008552.1  85 HRCSICLKEFPTGQALGGHKRRH 107
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00742951IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-132953IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.0012951IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6582951IPR007087Zinc finger, C2H2
SuperFamilySSF576678.77E-92951No hitNo description
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576678.77E-980107No hitNo description
PfamPF139123.7E-1384109IPR007087Zinc finger, C2H2
SMARTSM003550.2185107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.74685107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
LPPHARPRPI GAPPPPPPFA AAAQAPAEYR CSVCGKSFGS YQALGGHKTS HRRPVGSDDR  60
ASSSAGSAAE ASGSAGGGGG GGKVHRCSIC LKEFPTGQAL GGHKRRHYEG VVGGGASTTH  120
RGFDLNIPAA AEFAGFDAAR RWAAAAEEEE VQSPLAFKKP RLLIPA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6678891e-43KM667889.1 Ananas bracteatus clone 53334d microsatellite sequence.
GenBankKM6678901e-43KM667890.1 Ananas bracteatus clone 53334e microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095732.14e-67LOW QUALITY PROTEIN: zinc finger protein 1-like
SwissprotQ424302e-44ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A199W5429e-58A0A199W542_ANACO; Zinc finger protein ZAT10
STRINGXP_008792675.12e-50(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-26C2H2 family protein