PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco008558.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 131aa MW: 14566 Da PI: 6.5104

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco008558.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	69.9	3.9e-22	2	41	17	56
G2-like 17 aveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 a+e+LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Aco008558.1 2 ALEHLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 41 89************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.638	1	43	IPR017930	Myb domain
SuperFamily	SSF46689	4.36E-9	2	44	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-18	2	41	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.6E-18	2	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MALEHLGGAQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRMPNTAP NPNPQVVVMG 60 GLWMQQQQQQ QQQQQQQDQD TASQQSTSQS GSPQGPLQFN SHGRALSMTT TTNGDSCEEE 120 DGRSESYSWK *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666822	1e-111	KM666822.1 Ananas bracteatus clone 52223c microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941843.1	8e-49	myb family transcription factor EFM
Swissprot	Q5VRW2	1e-26	NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBL	A0A199W603	5e-87	A0A199W603_ANACO; Transcription factor PCL1
STRING	XP_008792589.1	7e-48	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco008558.1

Publications ? help Back to Top
Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]