PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008560.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Dof
Protein Properties Length: 362aa    MW: 38378.4 Da    PI: 10.1064
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof107.28.3e-34150207562
       zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +l+cprC+s ntkfCy+nn+s +qPr+fC++CrryWt+GGalrnvP+Gg++r++k++s
  Aco008560.1 150 SLRCPRCNSPNTKFCYFNNHSRAQPRHFCRTCRRYWTQGGALRNVPIGGTSRRSKRKS 207
                  579**************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088427.773151205IPR003851Zinc finger, Dof-type
PfamPF027013.6E-30151205IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-20152205IPR003851Zinc finger, Dof-type
PROSITE patternPS013610153189IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSPVPGYILG AIAIDSADSS RGVADKERRE PMFRVVRSGG VGMWCRFHLP ARQGSPALVC  60
TCGSDDQTKA VGAAARGNTN SFRLRVYFVT PRAHKELAKM IEEVTAGGVV TKKSNTSTNP  120
SVGQLVNNSS SATAVAAALS SSSSLLHSGS LRCPRCNSPN TKFCYFNNHS RAQPRHFCRT  180
CRRYWTQGGA LRNVPIGGTS RRSKRKSTNL ILSGGPSMVS PTAMRAMPYC RTSAHHLMAL  240
LWPNCGPNPR LGPSISPINS LLSEVPNYYY KDHLNTVTSI VDCFAFTSAS ASASASASAS  300
ASDITTSNSS SGSLLVATTT RSASSISESV PLMESEFGYC LNSAFTWPHL PTTISGSSTF  360
P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095237.10.0dof zinc finger protein DOF1.4-like isoform X1
TrEMBLA0A199W5U41e-157A0A199W5U4_ANACO; Dof zinc finger protein DOF5.7
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-27DOF zinc finger protein 1