PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008687.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LSD
Protein Properties Length: 172aa    MW: 18081 Da    PI: 8.5471
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008687.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.16.1e-13731125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr +L YPrGA+sV+CalC t+
  Aco008687.1  7 CNGCRSMLLYPRGATSVCCALCRTI 31
                 ***********************97 PP
2zf-LSD143.36e-144670125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggCrtlL+YP GA  VRC++C+ +
  Aco008687.1 46 CGGCRTLLMYPHGAATVRCSCCNMI 70
                 **********************975 PP
3zf-LSD145.51.2e-1484108125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  C +Crt+L+YP+GApsV+Ca+C+ V
  Aco008687.1  84 CAQCRTTLMYPYGAPSVKCAVCHYV 108
                  **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.1E-12434IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-144373IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-1181109IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQSQVVCNGC RSMLLYPRGA TSVCCALCRT ITSVPPPGVE TAHLICGGCR TLLMYPHGAA  60
TVRCSCCNMI NNVRSANSVA HVNCAQCRTT LMYPYGAPSV KCAVCHYVTN TGMTNMMAPA  120
SVPQRPNEYP STSAPPSQGN NVTVVVENPK SVDERGNLVN NVVVGVTVGK K*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095313.11e-120protein LOL3-like
SwissprotQ6ASS24e-74LOL3_ORYSJ; Protein LOL3
TrEMBLA0A199V4M51e-118A0A199V4M5_ANACO; Protein LOL3
STRINGXP_008776040.13e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-49lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]