PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008751.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family YABBY
Protein Properties Length: 179aa    MW: 20161.9 Da    PI: 8.4017
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008751.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.41.3e-6421522170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                  +++ ++e+vCyv+CnfC+tilavsvP +slf++vtvrCGhC  llsvn+ +  q+la ++          + ++kv +en+ ++++++++++t ++  
  Aco008751.1   2 STQIAPEHVCYVHCNFCSTILAVSVPCNSLFNIVTVRCGHCGVLLSVNMGNLLQTLARQDY---------QIHNKVLRENCGEYESSSKCNKTPMAY- 89 
                  66789*************************************************9999995.........344566778888888888888887776. PP

        YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  ++++n+++  p     +rPPekrqrvPsaynr   eeiqrika+nP+ishreafsaaaknWahfP+ihfgl
  Aco008751.1  90 SMPNNQQQVQP-----MRPPEKRQRVPSAYNR---EEIQRIKANNPEISHREAFSAAAKNWAHFPRIHFGL 152
                  66888888877.....7**************7...**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-646152IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSTQIAPEHV CYVHCNFCST ILAVSVPCNS LFNIVTVRCG HCGVLLSVNM GNLLQTLARQ  60
DYQIHNKVLR ENCGEYESSS KCNKTPMAYS MPNNQQQVQP MRPPEKRQRV PSAYNREEIQ  120
RIKANNPEIS HREAFSAAAK NWAHFPRIHF GLTLDGANPE KRDEEITMPG PQKAQGFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095287.11e-131protein YABBY 2-like
SwissprotQ10FZ73e-73YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0TFM34e-83M0TFM3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07830_0017e-84(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-62YABBY family protein