PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008865.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 204aa    MW: 23276.5 Da    PI: 8.413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008865.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++++G g+W++ ++  g+ R++k+c++rw +yl
      Aco008865.1 14 KGAWTKEEDDRLVAYIREHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +Edel+v+++ +lG++ W+ Iar ++ gRt++++k++w+++
      Aco008865.1  67 RGNFSHDEDELIVKLHSLLGNK-WSVIARSLP-GRTDNEIKNHWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.237961IPR017930Myb domain
SMARTSM007179.1E-141363IPR001005SANT/Myb domain
SuperFamilySSF466892.52E-2913108IPR009057Homeodomain-like
PfamPF002497.0E-161461IPR001005SANT/Myb domain
CDDcd001676.14E-111661No hitNo description
PROSITE profilePS5129427.81562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2665116IPR009057Homeodomain-like
SMARTSM007173.1E-1666114IPR001005SANT/Myb domain
PfamPF002495.3E-1667111IPR001005SANT/Myb domain
CDDcd001671.22E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIR EHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SHDEDELIVK LHSLLGNKWS VIARSLPGRT DNEIKNHWNT HIRRKLLSRG  120
IDPATHHPIQ APPSDFAASF VKEEVKHQKE GVLRQDEETS ATAPCEHYRC PDLNLELCMS  180
PPPFHQQLPV NNGVLDYRAI EMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095461.11e-151myb-related protein Zm38-like
SwissprotP813935e-92MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A199UK001e-150A0A199UK00_ANACO; Myb-related protein 308
STRINGXP_008788440.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-91myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]