PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco008968.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ERF

Protein Properties

Length: 228aa MW: 24126.8 Da PI: 7.408

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco008968.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.7e-18	56	114	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ rWv+e+r+p++ +g ++ +r++lg+f tae+Aa+a++ a+++l+g Aco008968.1 56 PVYKGVRQRG-GERWVCEVREPNNgpGGgaRSnARIWLGTFPTAEMAARAHDVAALALRG 114 68*****9.8*****888874478446***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.6E-13	56	114	IPR001471	AP2/ERF domain
SMART	SM00380	8.1E-23	57	128	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-18	57	123	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.3E-28	57	124	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.72	57	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-7	58	69	IPR001471	AP2/ERF domain
CDD	cd00018	4.15E-17	58	124	No hit	No description
PRINTS	PR00367	3.9E-7	88	104	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSLNPSTSTT NINYSPHCDD DAASASASAS ALYATVSSAP PKRRAGRTKF RETRHPVYKG 60 VRQRGGERWV CEVREPNNGP GGGARSNARI WLGTFPTAEM AARAHDVAAL ALRGRAACLN 120 FADSPRVLRL PESRDPRDIR KAAAAAAEAF RPPLPTPSAC GDSGNGNAAA AARAEIEYSS 180 YAADDGLCDY GMYVDMARGM LIDPPAMWGS GREDESGEDV ALWSHSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020095414.1	1e-164	dehydration-responsive element-binding protein 1G-like
Swissprot	A2XWL6	2e-55	DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
Swissprot	Q8H273	2e-55	DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBL	A0A199UTK9	1e-134	A0A199UTK9_ANACO; Dehydration-responsive element-binding protein 1E
STRING	XP_008803257.1	7e-67	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	1e-33	C-repeat-binding factor 4

Link Out ? help Back to Top
Phytozome	Aco008968.1

Publications ? help Back to Top
Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP Over-expression of OsDREB genes lead to enhanced drought tolerance in rice. Biotechnol. Lett., 2008. 30(12): p. 2191-8 [PMID:18779926] Li S, et al. Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice. Front Plant Sci, 2016. 7: p. 465 [PMID:27148296]