PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco008972.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 256aa MW: 28098.6 Da PI: 5.4163

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco008972.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.5	1.4e-35	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sw eng++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkkv +++ weF+++sF++g+++ll++i+ Aco008972.1 18 FLMKTYELVDDPAVDDVVSWGENGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANESFRRGERRLLSEIH 105 9***************************************************************99.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ Aco008972.1 106 RRR 108 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.75E-34	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.8E-56	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.8E-38	15	107	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.1E-20	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.6E-31	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-20	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-20	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MHPTRGSGAS ALSSSPPFLM KTYELVDDPA VDDVVSWGEN GSTFVVWRPA EFARDLLPKY 60 FKHNNFSSFV RQLNTYGFKK VVTDRWEFAN ESFRRGERRL LSEIHRRRVC PAVAVAVPMP 120 IQSPGSSGED PQVLSLSSTT SPPQPLPPPP PPPPHVDLAE ENEWLRTENA RLSRELGDMR 180 GLCSNIFRLV TTYTADEGTS SVPPPPPPAP PPPPQALELF PRRTSEEEAV SLLFGVPIGG 240 RREPSARAPG ADPEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-26	6	107	17	129	Heat shock factor protein 1
5d5v_B	4e-26	6	107	17	129	Heat shock factor protein 1
5d5v_D	4e-26	6	107	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106525	3e-70	AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096501.1	0.0	heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	2e-70	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A199V710	0.0	A0A199V710_ANACO; Heat stress transcription factor B-2b
STRING	XP_008799550.1	2e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	4e-59	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	Aco008972.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]