PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008998.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 114aa    MW: 12748.8 Da    PI: 12.149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008998.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.31.4e-21554255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a+++a+++l+g
  Aco008998.1  5 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDHAARSLRG 54
                 7********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-36568IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23563IPR016177DNA-binding domain
CDDcd000181.37E-25561No hitNo description
Gene3DG3DSA:3.30.730.105.9E-33563IPR001471AP2/ERF domain
PROSITE profilePS5103222.708562IPR001471AP2/ERF domain
PfamPF008474.7E-14554IPR001471AP2/ERF domain
PRINTSPR003672.8E-11617IPR001471AP2/ERF domain
PRINTSPR003672.8E-112844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGEVHYRGVR KRPWGRYAAE IRDPWKKTRV WLGTFDTPEE AALAYDHAAR SLRGDKAKTN  60
FPRSPPPPSP PPPPPRLLLL LSPRSQPPLS LLRGGGPPPP RPLRVHRSRR STV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22562563ATERF1
3gcc_A1e-22562563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946502e-54FP094650.1 Phyllostachys edulis cDNA clone: bphylf047i23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789748.12e-34ethylene-responsive transcription factor 12-like
RefseqXP_016456594.11e-34PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID61e-34ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A199W1L76e-37A0A199W1L7_ANACO; Ethylene-responsive transcription factor 12
STRINGAquca_036_00073.16e-34(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-35ERF domain protein 12