PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009021.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 260aa MW: 27226.4 Da PI: 8.9556

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009021.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.6e-39	34	92	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+al+cprC+s+ntkfCy+nnyslsqPr+fCkaC+ryWt+GGalrnvPvGgg+rknk+ Aco009021.1 34 ESALRCPRCESSNTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRNVPVGGGCRKNKRL 92 67899***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	33	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MTQTTSKPPP AAAAAAAAAE DRTQQQQQGA SASESALRCP RCESSNTKFC YFNNYSLSQP 60 RHFCKACKRY WTRGGALRNV PVGGGCRKNK RLRKLPPHTP KSTSTATATA TAAAAAAPPP 120 HPLQLIPNSD FSDTTATAIN PLLLFSSSSS ADFSFPAPPI SHLDSIDVGY ISNQFQLMPD 180 NLVAANNLLL ESTLSHPPPP LYGENGSVGL IKEAKLPSSE SISSFATNNF FPSSGGIGGY 240 SYGYGYGYGG YGSSVAPLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM664861	0.0	KM664861.1 Ananas bracteatus clone 49880a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020095263.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A199W5N1	1e-128	A0A199W5N1_ANACO; Dof zinc finger protein DOF2.4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-35	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Aco009021.1