PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009064.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 766aa    MW: 84532 Da    PI: 4.8838
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009064.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.9e-1946101156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rr+  ++t++q+++Le++F++n++p++++r+eL  +lgL+  qVk+WFqN+R++ k
  Aco009064.1  46 RRRYNRHTAHQIQTLEAFFKENPHPDEKQRRELGLELGLEPLQVKFWFQNKRTQTK 101
                  788899***********************************************998 PP
2START150.61.4e-472194452203
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECT CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetleviss 87 
                  la +a++el+ +a++ ep+W +s+    +++n++e+ q ++++ +      ++ea ra++vv  ++ +l  ++++ +     ++  +  a+t+e+   
  Aco009064.1 219 LAIDAMTELINMAQLVEPLWLRSPdgtnDILNEEEYAQHLSRGVGpridgLKTEATRATAVVALDCRQLIDIFMNANSyesFFSSIVSTASTVEAFPA 316
                  7889************************************99776********************************77766777777******9999 PP

                  T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
        START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghskvtwvehvdl 172
                          +lqlm+ae+q++splvp R+ vf+Ry++q+g+g w++vdvS d   + +       +     ++++pSg++i+ +++g skv+wvehv++
  Aco009064.1 317 EvqgsddKTLQLMKAEFQFPSPLVPkRECVFLRYCKQHGEGLWAVVDVSFDGHGYSEIittdgrDYTKTTCRRRPSGCIIQAMQDGSSKVVWVEHVEV 414
                  8999999********************************************999988786664455567799************************** PP

                  -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
        START 173 kgrlphwllrslvksglaegaktwvatlqrq 203
                  ++  +h++++++v+sgla+ga++w at +r+
  Aco009064.1 415 DDGGVHEMYKPFVNSGLAFGASQWIATIDRH 445
                  ****************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-203397IPR009057Homeodomain-like
SuperFamilySSF466897.52E-1935103IPR009057Homeodomain-like
PROSITE profilePS5007117.55643103IPR001356Homeobox domain
SMARTSM003897.8E-1845107IPR001356Homeobox domain
CDDcd000867.90E-1145104No hitNo description
PfamPF000461.2E-1646101IPR001356Homeobox domain
PROSITE profilePS5084833.498209451IPR002913START domain
SuperFamilySSF559613.98E-27213448No hitNo description
CDDcd088753.15E-100213445No hitNo description
SMARTSM002342.1E-34218448IPR002913START domain
PfamPF018524.2E-38219446IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-9271448IPR023393START-like domain
SuperFamilySSF559619.89E-10518756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
NNMSESRQSL SMEDQQDLLL HLEPKDENQT PLQEEGDLNS NSTSKRRRYN RHTAHQIQTL  60
EAFFKENPHP DEKQRRELGL ELGLEPLQVK FWFQNKRTQT KNHHEKQDNY RLKEENETLK  120
AENTSLKEAL SSAFCPSCGD PRALSLEEHK LRVENATLRE EIKRVIAITS KYVGGPSVMY  180
QMLSSPLPSI QPMDGGVGRP EVWQGMTVGD SARPAIAQLA IDAMTELINM AQLVEPLWLR  240
SPDGTNDILN EEEYAQHLSR GVGPRIDGLK TEATRATAVV ALDCRQLIDI FMNANSYESF  300
FSSIVSTAST VEAFPAEVQG SDDKTLQLMK AEFQFPSPLV PKRECVFLRY CKQHGEGLWA  360
VVDVSFDGHG YSEIITTDGR DYTKTTCRRR PSGCIIQAMQ DGSSKVVWVE HVEVDDGGVH  420
EMYKPFVNSG LAFGASQWIA TIDRHVMAIN NSIFEYNGDD PKSRSFEYKY AFSKSKFSFL  480
SLEIFNMHAQ LFATVALILH DEKFSILQLY IAVDPNGGKN LLKQAENMMK SFCGAISGSP  540
EHEWTVEAGI GTEEEAAAKV MSKTINNNGD QDPNNPTGVA LSACISFWLA VPMRRVFEFL  600
RSETSRHEWD AFYDGSEIQV AEVANCQGRQ NCVSILRTGG SASGDENNIM ILQQSCYNTS  660
GSFVIYAPID ATALNMVLSG ADPTSAIALL PSGFAIHPDM KSGAENGMAC DGENGGSLLT  720
VVFQIIADRS GPEPGLPAGS VSTVRNLVSG TCERIRAALS GDNGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095129.10.0homeobox-leucine zipper protein ROC2-like
TrEMBLA0A199URP80.0A0A199URP8_ANACO; Homeobox-leucine zipper protein ROC1 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2