PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009099.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 574aa    MW: 64591.3 Da    PI: 6.5627
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009099.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.49.1e-1302045722373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cAea+s+++ e+ +al+++ + ++s +g+p+qRl ay+ e+L ar  +s++++y+al+++e +   s+e l++++++++++P++kf++++aN
  Aco009099.1 204 KQLLIKCAEALSENKIEEFDALVQEAHGMVSISGEPIQRLGAYLIEGLVARKESSGTNIYRALKCREPE---STELLSYMRTLYDICPYFKFGYMAAN 298
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + + l+ +g+ L+++ +++++p+ef+ l    + +++ e+L+
  Aco009099.1 299 GAIAEALRSEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPLSEyaRGDGLQLVGKMLSDMSKKFNIPLEFTGL-PVYCPQVTREMLD 395
                  **************************************************9998999**************************5.88899******** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEalaVn+ l+lh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++Fl+rfle+l+yy a+f+s++++lpr+s+eri+vE+++l+++
  Aco009099.1 396 IRPGEALAVNFTLHLHHTPDESVDVSNPRDGLLRMVKGLSPKVTTLVEQESNTNTTPFLTRFLETLDYYYAMFESIDVTLPRDSKERISVEQHCLAKD 493
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ivn++aceg+ r+erhe l+kWr+rl++aGFkp+pls+++++ +k ll  ++ d y++ e++g+++lgWk+r+L+s+SaW
  Aco009099.1 494 IVNIIACEGDGRVERHELLGKWRSRLTMAGFKPYPLSSYVNSVIKKLLGFYS-DKYTLVEKDGAMLLGWKNRSLISASAW 572
                  ************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.68177554IPR005202Transcription factor GRAS
PfamPF035143.1E-127204572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDLHQLLKYG LTASDHSCEF PAPRTPAYSD WSANSIKFNL GNSPHSPLLT QLDSDNLSVY  60
SSSISKQRSP IESLSGNIHS QHSPLEPGSS LRQFQIKFSE FTEPNSQNTI TSQNMRHALQ  120
ELETVLMAPD TDEGATSTNP NTDEHKPAKV ARQLSRTWSH ESRREPIIMV QPQFTSNRYP  180
VQSFEVRPEK RPREMKEDPQ NKVKQLLIKC AEALSENKIE EFDALVQEAH GMVSISGEPI  240
QRLGAYLIEG LVARKESSGT NIYRALKCRE PESTELLSYM RTLYDICPYF KFGYMAANGA  300
IAEALRSEDR IHIIDFQIAQ GTQWITLIQA LAARPGGPPH VRITGIDDPL SEYARGDGLQ  360
LVGKMLSDMS KKFNIPLEFT GLPVYCPQVT REMLDIRPGE ALAVNFTLHL HHTPDESVDV  420
SNPRDGLLRM VKGLSPKVTT LVEQESNTNT TPFLTRFLET LDYYYAMFES IDVTLPRDSK  480
ERISVEQHCL AKDIVNIIAC EGDGRVERHE LLGKWRSRLT MAGFKPYPLS SYVNSVIKKL  540
LGFYSDKYTL VEKDGAMLLG WKNRSLISAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-731875723378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6614191e-110KM661419.1 Ananas bracteatus clone 43498 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095822.10.0chitin-inducible gibberellin-responsive protein 1-like isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2H3WZP80.0A0A2H3WZP8_PHODC; chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_008776123.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]