PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009157.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 213aa    MW: 22395.8 Da    PI: 6.7442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009157.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078118140123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k+F++   L  H  +H
  Aco009157.1 118 YECKTCSKCFPSFQALGGHRASH 140
                  99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-5117144No hitNo description
PfamPF139121.2E-11117142IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MESPESPAAK SVAKRKRSKR LRPVPAAAAS SASSSSAEFS SGCTATAADD DDMAANCLIL  60
LAQGRCDSPA AAAADDNDVV EIRPPELQLP LPPARQGGDR QNEKFGGSRR FTAGFYVYEC  120
KTCSKCFPSF QALGGHRASH KKPRLSSASA EAAESKKEER GGGAVLSLDL NLPAPSDDVD  180
GRVAAFAESQ FQQQQQQQQL FSASSALVDC HY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086452e-31AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence.
GenBankAL6066032e-31AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBankAL6066542e-31AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBankAP0149602e-31AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-31CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8336972e-31CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
GenBankCU4057772e-31CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112601.11e-152zinc finger protein ZAT5-like
TrEMBLA0A199VV524e-65A0A199VV52_ANACO; Zinc finger protein ZAT5
STRINGXP_008807698.19e-26(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.19e-17C2H2 family protein