PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009304.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YC

Protein Properties

Length: 124aa MW: 12918.8 Da PI: 10.55

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009304.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	100.1	1.6e-31	22	110	19	99
NF-YC 19 helPlarikkilk........adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k a ++v+mis eaP+++skacelf+ elt r+w + krrtl+k d+aaa++ tdifdflv+ v ++ Aco009304.1 22 HSLPLARIKKIMKrsasgstaAGDEVRMISGEAPIVFSKACELFVEELTRRAWAVTVRGKRRTLHKDDVAAAIAATDIFDFLVELVSES 110 89*********444443333589*********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.95E-24	18	103	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-30	19	94	IPR009072	Histone-fold
Pfam	PF00808	8.9E-17	23	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MRQAGAYSGL LSGGIGARTG PHSLPLARIK KIMKRSASGS TAAGDEVRMI SGEAPIVFSK 60 ACELFVEELT RRAWAVTVRG KRRTLHKDDV AAAIAATDIF DFLVELVSES NGNSSGGSGR 120 VLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-32	22	107	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020112974.1	5e-84	nuclear transcription factor Y subunit C-2-like
Swissprot	Q8LCG7	6e-32	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A199W3I5	1e-82	A0A199W3I5_ANACO; Nuclear transcription factor Y subunit C-2
STRING	Aquca_013_00352.1	3e-57	(Aquilegia coerulea)
STRING	XP_008806887.1	7e-57	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11658	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	3e-22	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	Aco009304.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]